Rnym012135.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- retn
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000014.1:2863060-2873701[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-17 2.8e-14 53.7 0.0 27 89 2 62 1 62 0.94 2 2 0.99 1.9e+03 -0.2 0.7 69 86 130 151 115 152 0.66
Sequence Information
- Coding Sequence
- ATGGCTAAACGTGTGTTGGACCTATACACGCTGTACAAACTAGTCGTACAAAGAGGAGGAATTGTGGCGGTCATCACTAAAAAATTGTGGCAAGAGATAATTCGTGGCTTGGGCTTACCGCCGTCCATCACTAGCGCAGCTTTCACGTTGAGAACgcaATATGTCAAGTATCTGTACGCGTACGAGTCGAAAATGAATCAGTTCAGCACGGTGGACGAACTGAACATGGCCATAGCCGGAAACCGGCGCGAGGGCCGCCGAAACAAGTCTCTGATGTCCGAGTACATGCCCGCGCTCCCAGCGACCACGGTCGCCGGCCACCTGCATCACCACGGTCAACTGTCGTCGGCGGCGCACGGTCAACACCATAATCACCAGCAACAGCAGCATCATCACCAGCAACAGCAGCACCATCaccagcaacagcagcagcactACGCTAACGTGCTAGCCGCCGACGATCGGTTCCGCCACTTGGCCGCCGCCATTATAGACAACAACAGACACCGCGCCGCCACGGAACAGGGCAGACAGcagccgccgccgtcgtcgtcgtcgtcgtcgccgcgGCCCGGCAGTCCGATGCAACGGCTGTCCCAGCTccagccgccgccgccgtgcGCGGCCGCCGAAGCGTCACCGTTGTTCAACGGCCATCAGCTACAATTGCCGCCGTACCAATCGGCCACGATGATGGCCGCTGCAGCGCATCAGGTAGCGGCCGCCGGCGACCACAGCAGCAAACAGagagaaattcTCAGTATGTTGATGTGGATGGATTTAATGAGAGTTAATCAAACAGCTATTCCAAGACTTTCAATACAAAACTTGCAACAGTCATGCAGCCCGTCACCATACGCTACCGTACCAGCCGCGATGAATCTACAACGTCAGTCTCCGGTCGCATTGCATTCAAATAACGGACCCGAACAGTGTGAGGCGTTGAATTTAGGTAAAAAAGATCAAGGGACGAACAACAATAACGCAGGTGAAAACGAGGACGAACCGGATCAAAAACGCATAAAAAAGGAACGGTCGCCACGGGTTATCGTGGCTAGTCGTCCGGCCAGCCCCAAGATGACGAGCCCTGAACGATTTCCGGCGCCAACCATAAATAGTCCGATACGGGAGTCATCTACATCGCCTAAACGGAATGATGACGACAAAGCGACGGGCAGCAACGGTACGATCGAAATGGACATTAGTGTGTCGGCCGGTACGCCTAGCGGTCTCAAAATAAACgtttgtaaaaaaacaaaaaatggaaTTTACAAAGGTCAACTTGTCAAAGTTGAATCAGAATTAAATGGaggaacGAAGAACACTAGACCCTTTATTTTGCGCCTCAATGGTGAACTTTACACAGGATGCCTACAACAACAAAGCAGTCTTGATAATCATGACGACCAACATTCTAGTTAA
- Protein Sequence
- MAKRVLDLYTLYKLVVQRGGIVAVITKKLWQEIIRGLGLPPSITSAAFTLRTQYVKYLYAYESKMNQFSTVDELNMAIAGNRREGRRNKSLMSEYMPALPATTVAGHLHHHGQLSSAAHGQHHNHQQQQHHHQQQQHHHQQQQQHYANVLAADDRFRHLAAAIIDNNRHRAATEQGRQQPPPSSSSSSPRPGSPMQRLSQLQPPPPCAAAEASPLFNGHQLQLPPYQSATMMAAAAHQVAAAGDHSSKQREILSMLMWMDLMRVNQTAIPRLSIQNLQQSCSPSPYATVPAAMNLQRQSPVALHSNNGPEQCEALNLGKKDQGTNNNNAGENEDEPDQKRIKKERSPRVIVASRPASPKMTSPERFPAPTINSPIRESSTSPKRNDDDKATGSNGTIEMDISVSAGTPSGLKINVCKKTKNGIYKGQLVKVESELNGGTKNTRPFILRLNGELYTGCLQQQSSLDNHDDQHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134025; iTF_01037531; iTF_01031741;
- 90% Identity
- iTF_00134025;
- 80% Identity
- -