Rnym016067.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000019.1:9886152-9889849[+]
Transcription Factor Domain
- TF Family
- TF_bZIP
- Domain
- bZIP domain
- PFAM
- AnimalTFDB
- TF Group
- Basic Domians group
- Description
- bZIP proteins are homo- or heterodimers that contain highly basic DNA binding regions adjacent to regions of α-helix that fold together as coiled coils
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1 1.1e+03 0.2 0.5 33 49 404 420 399 423 0.76 2 2 9.5e-08 9.3e-05 22.8 17.6 2 51 417 466 413 472 0.86
Sequence Information
- Coding Sequence
- ATGgcatactattactattaccaAACACCATCCGACCCACTATCACCTATACCAGCCACAGAAGAATTATCACCATCACAGCCCCCTTTATTAATGCTATCATCTCCACAGCAACAACAGCAATTAAATCTACCACTTCTCACACCAATTATTCCATCGGCAACAACATCGATGTCAATGATGACAACGACTACTACTACTTCCACAGAGCATAATGAACAGCAGCAGCTACCCACACCAAATACATTCATTAGGCATTGTGATGATATGGGTTTATTTCACGATTTACAAAACATTGTAGTGATGTCTTCGTTAACTGGACCAACAGGTGATACAACCATTAGTACGGCTCCTACGTCTAATTCTGCTACGGTAATCACCACGGCAACATCAACTGGACAACCTACTTCTTCAAATTTATTTGACTCGTCGTCAACAGCAATTGTGACAACTATGATGATGGCCAATCCATTTGACGAAACATTTAAACAAGCTGTATtgcaacaacaaaaaaatgaagttAATCCATCAGAAAATCTTTTCAATCACAATGATAACAATGATGGTGATTTGAACACCCCATTCATAGCAACAACCACTGTTGTTAACACATCCAATAACAATACTActGTAAAAGCTTCCACATCGATAGATATGATTTCTACGACTAAAGCAGCAGTTGAATCTAATAAGATGAATACAACTACTGTACCTCAATCTCAAGCAGAACCTCagcaaaatgtttatatcacGTCAACAGCAGAAgcGCCAACTAGAAGTGTCTTAGTTATGATGGTGGAACATCCACAACAACAATTACGTAACTCAACTCTCCCTATACAACCTGAACATCAACAACACCAACAAATAATCGATCAGCATAAATTCATTGTTCCAACAACCACAACCACAACTAGTGTTATTGacacaacaacaataacacaCCATGATCAAGATTTTTATGATGAAGAAATTGATGTTGATAGTGGCCGTGTAATCATCAATGTCAATAATGattcaaatacaattaaacagACTCTTAAACAGAATCTATTAGTAAAGCAATTGCTACAGAGGCGCCAGAAACCTCTACTTTTTACTAAAAGCTGTGACAAACTCGGTCAACTACTGCCACAGCAGAATAAAGACATTGATATTGTCACAAATATTGATAGAGTAGAACACgaaaactataatagtaatggCCAGGAAGACGAAGACTGCAATAGTCGAAAGCAGCAATTAAAACAGAAACGAAAACAAGAAATGTTAGAAAGAAACAGGTCAGCCGCAAAACGGTGTAGAATAAAGAGAAAACAGAGGTGGGAGCTACTTTCTGAAGAAAATCGGAAACTGAAAATCGAAAATAGCCGATTGCGTGAAGCTCTTTCAAAGCTTGTTACCCACAGATGTAATAACTTACAACAACATCAAATAGAACAGCCAGAGATAATACAAGGAATATTCAAACATAGTGGTGATGTTTAA
- Protein Sequence
- MAYYYYYQTPSDPLSPIPATEELSPSQPPLLMLSSPQQQQQLNLPLLTPIIPSATTSMSMMTTTTTTSTEHNEQQQLPTPNTFIRHCDDMGLFHDLQNIVVMSSLTGPTGDTTISTAPTSNSATVITTATSTGQPTSSNLFDSSSTAIVTTMMMANPFDETFKQAVLQQQKNEVNPSENLFNHNDNNDGDLNTPFIATTTVVNTSNNNTTVKASTSIDMISTTKAAVESNKMNTTTVPQSQAEPQQNVYITSTAEAPTRSVLVMMVEHPQQQLRNSTLPIQPEHQQHQQIIDQHKFIVPTTTTTTSVIDTTTITHHDQDFYDEEIDVDSGRVIINVNNDSNTIKQTLKQNLLVKQLLQRRQKPLLFTKSCDKLGQLLPQQNKDIDIVTNIDRVEHENYNSNGQEDEDCNSRKQQLKQKRKQEMLERNRSAAKRCRIKRKQRWELLSEENRKLKIENSRLREALSKLVTHRCNNLQQHQIEQPEIIQGIFKHSGDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00135071;
- 90% Identity
- iTF_01328367;
- 80% Identity
- -