Rmai001478.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- -
- Assembly
- GCA_003676215.3
- Location
- NC:64323467-64326788[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.36 26 5.0 0.1 3 21 166 184 164 185 0.78 2 15 8.5 6e+02 0.7 0.1 1 13 232 244 232 249 0.75 3 15 0.002 0.14 12.1 1.9 2 21 286 305 285 306 0.93 4 15 0.00031 0.022 14.6 3.5 1 23 313 335 313 335 0.96 5 15 8.4e-05 0.006 16.4 2.4 2 23 338 359 337 359 0.96 6 15 0.35 25 5.0 1.4 1 23 391 414 391 414 0.92 7 15 0.00013 0.0096 15.8 5.1 2 23 446 467 445 467 0.96 8 15 0.0017 0.12 12.3 6.2 1 23 473 495 473 495 0.99 9 15 0.0018 0.13 12.2 0.3 1 21 501 521 501 521 0.96 10 15 0.00062 0.044 13.7 1.5 1 23 526 548 526 548 0.96 11 15 0.00019 0.014 15.3 2.6 1 23 578 600 578 600 0.98 12 15 0.022 1.6 8.8 1.1 2 21 625 644 624 645 0.91 13 15 1.6e-05 0.0011 18.7 1.7 2 23 648 670 647 670 0.96 14 15 0.021 1.5 8.9 2.6 1 23 677 699 677 699 0.97 15 15 0.067 4.8 7.3 0.3 1 23 729 752 729 752 0.85
Sequence Information
- Coding Sequence
- atgttaaattctACCAATAACAATGTTGATTCTGAAAAATGGAAGGAAATTGTATCAGATGAAATTCAATCAGATATTGAAAAtTATTCAGATAATGAATTACCTCTTTCGTCAATAGTAACtactaataacattaataccgAAAAATGGCAAGATATTACATTGGATAATATTCAGTCTAACatgaaaaaTGATTCAGAAAATGAGTTATCTCTTTCATCAATATCCACTTTTAATGATAATCATAGAATTCCAAAGCATCAAGAAATCAATTTGGATGATACTCAATCTGACAATGAAaattgctTAGACAATGAATTACCTCTTTCGTCAATAGCAAATGTATTGCTTCTAAGTGATAGttgtaaatttgaaaaatctgAGTCAATTGATTACCGATCCAAGCTAAATGTTAATCATAATACACAATCTGTCTTACATCAAATATCCACCAAAGACCAAAGTAAAATAGATACACCAATGAGGAGGTATGGGTGTGATATCTGTGGGAAAATATTCCTTAGGCGTATTGcgattattgaacattttagaaCTAGTTTATGCTTTCCAGACAGtccttttgattttaaatttgacagcccaaattattatttatgtaataattctgAAGATTCAATATCatttgtcaataatataaataatttagaaacaaataatatgaaagcTACGACTTACAAATGCAGAGTTTGTCAAAatgtaattagaaataataatctaataaaaaggcaacaaatattacatactaaagaaaataacttattatgtgATATATGTTCAGTGTTAAATAGTATTGCATGTGGAAATAATCAACATCTTAAAGAAAAGTATACATGGAAATGTAAATCTTGTGGGCAGacatttactaaattatctGTTTTAAAAACTCACAGATGTATTTTTccaaagaataaattattcaattgttataaatgtcataaatcttataaaaacttaaatgctTTAGAAAAACATAAGattgttcataaattaaattgcaatatatgtaataaacaatTCTTTAAACAGTCAACTTTAACAGATCATAAAAGATTacactatttaaaaagtatcaacCAACccaatattcatttaaagtaCATGAATTCTAGTGTATTAAATACCAACAAAGCCTTCAACAcatctaaaaattatgaatgctCAAGATGCTCAGAATTGTTTCATAAACGTTCAGAAATAATTtctcatatttttgaaaatcatcgAGAAGATTATTCCAAATATAGTTGTGATGAATGTACAAATTTTAGTGATTCTTCACGtgactatattttatgtttagcaAAAAACCATTGCAAATGTGATGTTTGTCCCCAATCATTCACAACATCTCATAGACTACAACAGCATTATAGATGGCATCTtggtatcaataattttaaatgccaATTCTGTCCtaagacattttcaaaatgttttctttacTTGTCTCATGAAAGAACGCACACGGGAGAAAAACCATTCAGATGTAATTTTTGTGGCAAATGGTTTCCTGAgacatcaaatttaaatatccatTTAAAACCCTACAAACTTTTTGCATGTAATATATGCCAAAAATCGTATACTCGGATGTCTTCATTATTGTTCCATAAAAGAATACACGCTAAAGAAAAACGTCAAATTAAAAGCTGTaatcaattttcaactttagaAGTACGTACAAGACGACAATATACTAGAAGAAagcattttaattgtaaattatgtgccaaatcattttttcattcatGGTTGTTAAGTGCTCATCTAAAAACACATcaaaacagaaaaaatgttaaaaaatcatcATTAAACAAACACAAGAGACCACAAGAAGATAccatatgtattaaatgtaatttatgccAAGAATCATTTAGTGaccagaatattttaattactcatAGATGTAAGTCATCTACAtgcaaatattgtttaaaagtcTTTAATAATGTTTCTTCACTTAATAGACACTATAGATACATGCATCAAAAAAACAACGAACTCTTTGACTgtgatatttgtaaaatatcatttatgtgTTCAACTAGTCTTAATGAACATCTAAAAAAGCACACTCTTTGTGATAAAAACATGCCTCTTACATTTAATGTCaccaatgaaataaaaacagcaaaagaagaaatgtatttaaatgaagAATATAAATGTGATATTTGTATGAAAAGTTTTTTCAGTCAAACACAAATTATTCCTCACATTCTAGAAACTCATTATTag
- Protein Sequence
- MLNSTNNNVDSEKWKEIVSDEIQSDIENYSDNELPLSSIVTTNNINTEKWQDITLDNIQSNMKNDSENELSLSSISTFNDNHRIPKHQEINLDDTQSDNENCLDNELPLSSIANVLLLSDSCKFEKSESIDYRSKLNVNHNTQSVLHQISTKDQSKIDTPMRRYGCDICGKIFLRRIAIIEHFRTSLCFPDSPFDFKFDSPNYYLCNNSEDSISFVNNINNLETNNMKATTYKCRVCQNVIRNNNLIKRQQILHTKENNLLCDICSVLNSIACGNNQHLKEKYTWKCKSCGQTFTKLSVLKTHRCIFPKNKLFNCYKCHKSYKNLNALEKHKIVHKLNCNICNKQFFKQSTLTDHKRLHYLKSINQPNIHLKYMNSSVLNTNKAFNTSKNYECSRCSELFHKRSEIISHIFENHREDYSKYSCDECTNFSDSSRDYILCLAKNHCKCDVCPQSFTTSHRLQQHYRWHLGINNFKCQFCPKTFSKCFLYLSHERTHTGEKPFRCNFCGKWFPETSNLNIHLKPYKLFACNICQKSYTRMSSLLFHKRIHAKEKRQIKSCNQFSTLEVRTRRQYTRRKHFNCKLCAKSFFHSWLLSAHLKTHQNRKNVKKSSLNKHKRPQEDTICIKCNLCQESFSDQNILITHRCKSSTCKYCLKVFNNVSSLNRHYRYMHQKNNELFDCDICKISFMCSTSLNEHLKKHTLCDKNMPLTFNVTNEIKTAKEEMYLNEEYKCDICMKSFFSQTQIIPHILETHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305900;
- 90% Identity
- iTF_01305900; iTF_01329248;
- 80% Identity
- -