Rmai000313.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- -
- Assembly
- GCA_003676215.3
- Location
- NC:23963588-23967664[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00049 0.035 14.0 4.1 1 23 5 27 5 27 0.93 2 12 0.0011 0.075 12.9 2.0 3 23 32 53 31 53 0.97 3 12 0.00078 0.055 13.4 3.3 3 23 64 85 62 85 0.96 4 12 0.00014 0.01 15.7 0.1 3 23 92 114 90 114 0.92 5 12 3.7e-06 0.00027 20.7 3.3 1 23 118 140 118 140 0.98 6 12 0.0045 0.32 11.0 3.0 1 21 143 163 143 164 0.95 7 12 0.0001 0.0073 16.1 2.4 1 23 186 210 186 210 0.92 8 12 3.7e-05 0.0026 17.5 2.4 1 23 219 242 219 242 0.96 9 12 3.1e-05 0.0022 17.8 1.6 1 23 249 271 249 271 0.96 10 12 9.3e-06 0.00066 19.4 1.4 1 23 277 300 277 300 0.94 11 12 0.00052 0.037 13.9 0.8 1 23 306 328 306 328 0.98 12 12 0.00073 0.052 13.4 2.2 5 23 337 356 334 356 0.93
Sequence Information
- Coding Sequence
- ATGCCCGAGAATTACAGTTGTGATCATTGTGAAAAAACATTCACGAATCGTCGACATTATGATCTGCATGTTGACGGTCATTTACGAAACATTTGTCGTGTTTGTGGATTATCTTGCAACAGCCGTAAAATGTTGGTCACTCATATGTCTACAACCCATGGATCTAAATTGGACCCAATTGTGTTGGATTGCAAGTACTGTATGAAAACGTTTGTTCAAAAACGTTCATTGCACTTGCATTACAAGACTGTGCACAAAAACACGGGTACTATATGTCTCGATTGTGGACAGCCATTTGATAGTAAACAAGAACTTGctgatcatataaaaacaattaagcaCGGTGACGGTTTCATATGTCATAAGTGTGGGGAAGTTTTTACCCGAAATCAAcagtataaattacatttacaaAGGCACGATGCATACTGTTGTTTCAATTGCAATGCACAATTTGCAAATTCCAAAAAGTTGAACAAACATTTGAAATTGTGTATTTCAATACCACCGATCGACaactattctaaaaataaacagtcaACCACAGgtGTTGTTTATGAATGCATCGAGTGTAAAAAGtcgtttgagaaaaaaaaatattataaacgccaTATGAAAACGGTAATTCACTCAACTAATAAAGCTGATAATCCATTTTATTGTGCTCATTGtcctagaatattttattataaatttaatctagCATCACACATGAAAcaagtacattttaaacaatacaataattatatttgtaatttgtgtGGACGGAGTTTTCAAtatgcaaataattataaaaggcACAAAGATTCGCATATGCAAGTTAGAAATTATGTTTGTGAACACTGTGGTGCTTGTTTTTATCGTAAACAGGCTTTGCAAGATCATCAAATTGCTATACACAATGAAGAAAAGAATTTTGTTTGCAATGTATGtggtgataattttaaattaaaatccattTTAACAAGGCATATGAAAAATCATTCTGAAACCAAAAAATATGTGTGTCATTGTaaacgtatatttaaatttgcatcAAATTTACGTCGTCATCAAATCAACATCCACAATCAAGTATTTACTgactctataaaaataaaacgcttTGTGGAAGATATTAGCCGTTCATCTCCATTGGCAGTCATGAATGAAGAAAAAGAAATACAAagattgaaacaaaaaaatatcaaccaCCTTAGATTAGAAGACACTGTATCATATTCATTAATGGCGTATCCTGATAACTTAGATTTAAGTAGTGTCGATATAGCAGAAAGTGTACTTCAAGTAGCCTCAGCATCAAATTATAAGATAGAATGTGAAGAAAATTCATGTTTTCCTGGAATTCATCCTCCTATTGAAACATCTCTAGTATGCAGCTTAAATGATGGTGTAGATTTGTCTCCTAATTCTTCACAACAATACTTATCTGATTATGATGTTCCTCATCAGTTTCCATTTctgaatatttga
- Protein Sequence
- MPENYSCDHCEKTFTNRRHYDLHVDGHLRNICRVCGLSCNSRKMLVTHMSTTHGSKLDPIVLDCKYCMKTFVQKRSLHLHYKTVHKNTGTICLDCGQPFDSKQELADHIKTIKHGDGFICHKCGEVFTRNQQYKLHLQRHDAYCCFNCNAQFANSKKLNKHLKLCISIPPIDNYSKNKQSTTGVVYECIECKKSFEKKKYYKRHMKTVIHSTNKADNPFYCAHCPRIFYYKFNLASHMKQVHFKQYNNYICNLCGRSFQYANNYKRHKDSHMQVRNYVCEHCGACFYRKQALQDHQIAIHNEEKNFVCNVCGDNFKLKSILTRHMKNHSETKKYVCHCKRIFKFASNLRRHQINIHNQVFTDSIKIKRFVEDISRSSPLAVMNEEKEIQRLKQKNINHLRLEDTVSYSLMAYPDNLDLSSVDIAESVLQVASASNYKIECEENSCFPGIHPPIETSLVCSLNDGVDLSPNSSQQYLSDYDVPHQFPFLNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01434347;
- 90% Identity
- iTF_00973235;
- 80% Identity
- -