Rmai009144.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhopalosiphum maidis
Gene Symbol
-
Assembly
GCA_003676215.3
Location
NC:2944822-2979913[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 37 0.12 8.3 6.5 0.1 6 23 8 24 6 24 0.89
2 37 3.9e-07 2.8e-05 23.7 1.0 1 23 30 52 30 52 0.99
3 37 8.8e-07 6.3e-05 22.6 1.2 1 23 58 80 58 80 0.99
4 37 0.0034 0.24 11.3 0.0 7 23 92 108 86 108 0.90
5 37 5.7e-05 0.0041 16.9 0.5 2 22 115 135 114 135 0.97
6 37 8.7e-06 0.00062 19.5 0.1 1 23 142 164 142 164 0.99
7 37 3e-09 2.1e-07 30.4 1.3 1 23 170 192 170 192 0.99
8 37 4.9e-06 0.00035 20.3 6.6 1 23 198 220 198 220 0.99
9 37 4.5e-06 0.00032 20.4 5.3 1 23 226 248 226 248 0.99
10 37 1.1e-05 0.00082 19.1 1.4 1 23 254 276 254 276 0.99
11 37 2.3e-05 0.0016 18.2 0.1 1 23 282 304 282 304 0.98
12 37 1.4e-07 1e-05 25.1 2.1 1 23 310 333 310 333 0.98
13 37 9.2e-06 0.00066 19.4 1.1 1 23 339 361 339 361 0.99
14 37 2.6e-07 1.8e-05 24.3 4.3 1 23 367 389 367 389 0.99
15 37 3.7e-08 2.7e-06 26.9 0.4 1 23 395 417 395 417 0.99
16 37 0.00014 0.01 15.7 0.9 1 23 423 445 423 445 0.98
17 37 8.9e-07 6.4e-05 22.6 1.1 1 23 451 473 451 473 0.99
18 37 0.00029 0.021 14.7 0.1 1 23 479 501 479 501 0.99
19 37 1.2e-08 8.4e-07 28.5 2.2 1 23 507 529 507 529 0.99
20 37 4.5e-06 0.00032 20.4 5.3 1 23 535 557 535 557 0.99
21 37 2.6e-07 1.8e-05 24.3 4.3 1 23 563 585 563 585 0.99
22 37 1.1e-08 7.8e-07 28.6 0.4 1 23 591 613 591 613 0.99
23 37 0.00018 0.013 15.3 0.5 1 23 619 641 619 641 0.95
24 37 0.19 13 5.9 0.7 1 15 647 661 647 664 0.88
25 37 0.1 7.2 6.7 1.4 8 23 672 687 671 687 0.95
26 37 1.3e-06 9.5e-05 22.1 0.7 1 23 693 715 693 715 0.99
27 37 3.9e-08 2.8e-06 26.9 3.1 1 23 721 743 721 743 0.98
28 37 2.4e-06 0.00017 21.3 3.5 1 23 749 771 749 771 0.98
29 37 1.6e-06 0.00012 21.8 5.1 1 23 777 799 777 799 0.99
30 37 1.9e-07 1.4e-05 24.7 0.2 1 23 805 827 805 827 0.99
31 37 5.8e-07 4.1e-05 23.2 0.7 1 23 833 855 833 855 0.98
32 37 2.7e-08 1.9e-06 27.4 1.3 1 23 861 883 861 883 0.97
33 37 6.2e-07 4.4e-05 23.1 1.2 1 23 889 911 889 911 0.99
34 37 5.4e-05 0.0039 17.0 0.4 1 23 917 939 917 939 0.99
35 37 7.2e-09 5.2e-07 29.2 0.4 1 23 945 967 945 967 0.98
36 37 1.6e-06 0.00011 21.8 1.2 1 23 973 995 973 995 0.99
37 37 9 6.4e+02 0.6 1.7 2 10 1002 1010 1002 1011 0.92

Sequence Information

Coding Sequence
ATGTCAATAACATCTGATACGTGTGAATTGTTTTTTCAAGCAGGAAATTTAAAACAGCATATAACAACACATTCAAAAGAAAAGTCCTATAAATGTGATATCTGTTATAAAGGGTAttctcgaaaaataaatttaataacgcaTATAAGAACACATATAGGAGAAAAACCGTTTAAATGTTCAATCTGTAAAAAAGAGTTTTCTCGggcagtatatttaaaaatccataCAAGGATACATACTGGAGAAAATCCATATGATTGTGAAATCTATGATAAAGGGTTTtctacaaattcaaatttagctGTTCATTTAAAGTCACACATTAGTGAAAGGTTGAATAAATGTGATGTTTGTAATCAAGGGTTTTCTACaagaacaaattttatatcacATATAAGGACATATACAATGGATACACTATATAAATGTGATATATGTGGTGAATCGTTTGGTCTAGCTGGAACACTAGAAATGCATACAAGGACACATGGTGCGGAAAAACCATATAAATGTGAAATCTGTGGTAAAGAGTTTTCTACAAAATCACAACTAACAGTGCATACAAGGACACATACAGGAGAAAAACCATATAAATGTGATTTTTGTCATAAAAGGTTTTCTACCACATCATATTTAAAAGTGCATACAAGGACACATACAGGAGAAAAACCATATAAATGTGATTTTTGTCATAAAGGGTTTTCTACCACATCATATTTAAAAGTGCATACAAGGACACATACAGGAGAAAAACCATATAAATGTGATTTTTGTGGTAAAGGGTTTTCTATaagaacatatttaataatgcataCAAGAACACATACAGGAGAAAAGCCATATATGTgtgaaatatgtaataagGGGTTTTCTATAGATTCAAATTTAGCTGTTCATTTAAAGTCACACACTGGTGAAAGGTTGTATAAATGTGATGTTTGTAATCTACGGTTTTCTACaagaacaaatttaaaaaaccataTCAGGACATCTCATACAAGAGAAAAGCCATTTAAATGTGAATTTTGTGGTAAAGGGTTTTCTATaagaacatatttaataatacatacaaggACACATACAGGAGAAAAACCATATAAATGTGATTTTTGTCATAAAGGGTTTTCTaccaaatcaaatttaaaagtgcATACAAGGATACATTCAGTAGAAAAGCCATATCAATGTGAAATTTGTGAAAAAAGTTTTTCTATAAGAAGTAATTTAATAGTGCATATGAGGTCACATACAAGAAAAAAGCCACATAAATGTGAAATAtgtgataaaatgttttctacaGATTCAATTTTAGTTGTTCATTTAAAGTCACATACTAGTGAAAGGTTGTATAAATGTGATGTTTGTAATCTAGGGTTTTCTACaagaacaaattttatatcacATATAAGGACACATACAGGGGATACACCATATAAATGTGATATATGTGGTGAATTGTTTGGTCTAGCTGGAACACTAGAAATGCATAAAAGGACACATGGTGTGGAAAAGTCATATAAATGTGAAATCTGTGGTAAAGAGTTTTCTACAAAAGCACATCTAACAGTGCATACAAGGACACATACAGGAGAAAAACCATATAAATGTGATTTTTGTCATAAAGGGTTTTCTACCACATCATATTTAAAAGTGCATACAAGGACACATACAGGAGAAAAACCATATAAATGTGATTTTTGTCATAAAGGGTTTTCTaccaaatcaaatttaaaagtgcATACAAGGATACATACAGTAGAAAGGTCATATCAATGTGACATTTGTGATAGAGGGTTttctacaaaaacaaatttaatagtgCATATAAGGACGCATGCATGAGAAAAaccatataaatgtaatatatgggGAAAAGGATTTTCTACAAAAGGAAATTTAAAACACCATATAACAACACATTCAAAAGAAAAGCCCTATAAATGTGGTATCTGTTATAAAGGGTAttctcaaaaaattaatAAAAACCGTTTAAATATGCAATCTGTAAAAAAAGAGTTTTCTACAAGACCACATTTAATATCACATACAAAGACACATCCAGGAGATAAGCCATTTAAATGTGGTAACTgtggtaaattatttgttaaagcTGGAACACTAAAAAGGCATATAAAGACACATAGTGGAGAAAGGCCATATAAATGTGATATCTGTGGTAAACGATTTACTAGATCGGATCATTTAAAAACGCATACAATGATACATACTGGAGAAAAGCCACATAAATGTGCAATCTGTAAAAAAGAATTTTCTACaagaacaaatttaatatcacataCAAGGACACATACAAGAGAAAGGCCGTATAAATGTGAaacctgtaaaaaaaaattctctacAAGAGCACATTTAATATCACATACAAGAACACATACAGGGGAAACACCATATAAATGTGATATCTGTGGTAAATTGTTTGCTGAAGCTGAAACACTAAAAAGGCATATAAGGACACATACTGGAGAAAGGCCATATAAATGTGATATCTgtgataaattgttttctcAAACTGGAACACTAAATAGGCATATAAGGGAACATGGTGGAGAAAAACCACATATATGTGATATTTGTGATAAAGGGTTTtcttcaaaatcaaatttgacAGTGCATATAAGGAAACATACTGGATTAAAACCGTTTAAATGTGCAATCTGTAAAAAAGAGTTTTCTTCaagagtaaatttaatatcacataCAAGAACACATACTAGAGAAAGGCCATATAAATGTGATATCTGTGGTAATTTGTTTGCTCTAGCTGGAACACTAAAAAGGCATAAAAGGACACATAGTGGAGAAAAACCATATATATGTGATATTTGTGATAAAGGGTTTtcttcaaaatcaaatttgacAGTGCATATAAGGAAACATACTGGATTAAAACCGTTTAAATGTGCAATCTGTAAAAAAGAGTTTTCTTCaagagtaaatttaatattgcataAAAGGACACATACAggtgataagccataaaaatgtGATTTCTGTGATAGGAGGTTTTATTGTGcagcaaattaa
Protein Sequence
MSITSDTCELFFQAGNLKQHITTHSKEKSYKCDICYKGYSRKINLITHIRTHIGEKPFKCSICKKEFSRAVYLKIHTRIHTGENPYDCEIYDKGFSTNSNLAVHLKSHISERLNKCDVCNQGFSTRTNFISHIRTYTMDTLYKCDICGESFGLAGTLEMHTRTHGAEKPYKCEICGKEFSTKSQLTVHTRTHTGEKPYKCDFCHKRFSTTSYLKVHTRTHTGEKPYKCDFCHKGFSTTSYLKVHTRTHTGEKPYKCDFCGKGFSIRTYLIMHTRTHTGEKPYMCEICNKGFSIDSNLAVHLKSHTGERLYKCDVCNLRFSTRTNLKNHIRTSHTREKPFKCEFCGKGFSIRTYLIIHTRTHTGEKPYKCDFCHKGFSTKSNLKVHTRIHSVEKPYQCEICEKSFSIRSNLIVHMRSHTRKKPHKCEICDKMFSTDSILVVHLKSHTSERLYKCDVCNLGFSTRTNFISHIRTHTGDTPYKCDICGELFGLAGTLEMHKRTHGVEKSYKCEICGKEFSTKAHLTVHTRTHTGEKPYKCDFCHKGFSTTSYLKVHTRTHTGEKPYKCDFCHKGFSTKSNLKVHTRIHTVERSYQCDICDRGFSTKTNLIVHIRTHA*EKPYKCNIWGKGFSTKGNLKHHITTHSKEKPYKCGICYKGYSQKINKNRLNMQSVKKEFSTRPHLISHTKTHPGDKPFKCGNCGKLFVKAGTLKRHIKTHSGERPYKCDICGKRFTRSDHLKTHTMIHTGEKPHKCAICKKEFSTRTNLISHTRTHTRERPYKCETCKKKFSTRAHLISHTRTHTGETPYKCDICGKLFAEAETLKRHIRTHTGERPYKCDICDKLFSQTGTLNRHIREHGGEKPHICDICDKGFSSKSNLTVHIRKHTGLKPFKCAICKKEFSSRVNLISHTRTHTRERPYKCDICGNLFALAGTLKRHKRTHSGEKPYICDICDKGFSSKSNLTVHIRKHTGLKPFKCAICKKEFSSRVNLILHKRTHTGDKP*KCDFCDRRFYCAAN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-