Rmai007347.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- -
- Assembly
- GCA_003676215.3
- Location
- NC:50000867-50002697[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-07 0.00034 19.7 0.0 1 36 11 46 11 51 0.94 2 2 1.1 1.6e+03 -1.7 0.0 28 39 419 430 419 432 0.88
Sequence Information
- Coding Sequence
- atgGCTAAACGTGGAAAATATGGAAAATGGTCAGAAGAAGACCTACAACATGCTATCAGAGCATATAGTAACAACATTTATGGTCTCAATCAGTGCCAAAGAGTATATGGTGTTCCAAAAGCTACAATTAAGAGGCACTccgacaataaaaatatatttgttaatggACAGAAAAAATTTGGTACACCAACTACGTTTAACATAGACATGGAAAAAGAATTGGTTAGTCATATTTTAGCTTTAGACTCCTTATTTTTTGGATATACTATTACTGATATAAGAAAATTAGCATACGATATAGCAGAAAAGTATTCTCTAaatcacaaatttaataaagagAAGAAAATAGCAggtaaaaaatggttttatttgtttatgaaaCGAAATCCAAATATAGTACTCAGACAACCTGAAGCAACATCGATGGCTAGAGCCAAAGGGTTTAACAAAGAAAATGTTATGAGCTTTTTTGACTTATTGGAAAAAATTGtagatcaaaataaattaactgctAATAGAGTTTTTAACGTTGATGAGTCAGGGTTTACAACAGTACAGAAGAAACCACAAAAAGTTATCTCTCAAAAAGGCAAACGTTATGTTGGGTCCATAACTAGTGGAGAAAGAGgaaaCGTAAAGCGCCAGGAATTAGAAATTGGTGCACCTTCAGGTAGTATAGTTGAGATTTCTGACACTGGATACATTAATTCTGAACTATTTGTATCTtggttaaaacattttcattcaTGTGTAAAATCTACAATTGATGAgccagttttattattattggatggACACACAACACACAGCAAAAATTTGGAGGCATTATTATTTGCTAAGGAACATGGTATCATTTTATTGCAACTACCTGGGCACACCACTCATCGTTTACAACCTCTCGACGTTGCATTTTTCAAACCATTGGGATTATACTACATACAAACTCAAGAAAAGTGGTTAAGACAGAATTATGGTAAAACTATTTCTCAATACCAGGTTACAGGTTTGTTAAATGAAGCGTATGGTCGTGCAGCAACAATAGGTACAGCTGAAAATGGTTTCCGAGGCTCTGGAATTTGGCCAGTAAATAGACATTTATTTGAAGATcatcattttattgtttcaaataatttaaatagatctCCTACTCCTAATGAGAATGTAAGTGAAGACATGGAAAATGATCAAGTGTATTTAAACAGTAAAACAAATGATAtggaagaaaataaaaatattactgtcactgataaaactataaataggtCTACATTTTTGAAAGTTATTGAAGAAATCTCACCTATACCCAAAACTCAAAGAGATACTAAtgcaaaaccaaaaaaatctgCACAAAAGGCAATTGTTTTAACAAGCAGTCCCTATAAAAACTTACTAGAAAGCAGTAGAGCACagcaaacaataaaaaaaggaccaccaaaaaaaaaacttttttctgcAGCAAAAATTGATGGtgttaaaaccaaaaataaaaaaattgaaaaatctaaGGAATTAGAAAAGAAAAAGATACTGAATGAACAAGGAAGTCatcataaaaagaaaaaattgaaaaatataccatCTACATCAAAAAATGTTGGTAATGTTAGTTGGTACTGTCCTCTCTGTCaggaagaaaaaataattgatatggtCATGtgcaaaaaatgttcaatatggTTTCATGAAGAGTGTTTAGGATTGAATCGTGGTGACACATTTGAAGAGTGTCATTGGTGTACTGAAAAAAGTGACCAGTAA
- Protein Sequence
- MAKRGKYGKWSEEDLQHAIRAYSNNIYGLNQCQRVYGVPKATIKRHSDNKNIFVNGQKKFGTPTTFNIDMEKELVSHILALDSLFFGYTITDIRKLAYDIAEKYSLNHKFNKEKKIAGKKWFYLFMKRNPNIVLRQPEATSMARAKGFNKENVMSFFDLLEKIVDQNKLTANRVFNVDESGFTTVQKKPQKVISQKGKRYVGSITSGERGNVKRQELEIGAPSGSIVEISDTGYINSELFVSWLKHFHSCVKSTIDEPVLLLLDGHTTHSKNLEALLFAKEHGIILLQLPGHTTHRLQPLDVAFFKPLGLYYIQTQEKWLRQNYGKTISQYQVTGLLNEAYGRAATIGTAENGFRGSGIWPVNRHLFEDHHFIVSNNLNRSPTPNENVSEDMENDQVYLNSKTNDMEENKNITVTDKTINRSTFLKVIEEISPIPKTQRDTNAKPKKSAQKAIVLTSSPYKNLLESSRAQQTIKKGPPKKKLFSAAKIDGVKTKNKKIEKSKELEKKKILNEQGSHHKKKKLKNIPSTSKNVGNVSWYCPLCQEEKIIDMVMCKKCSIWFHEECLGLNRGDTFEECHWCTEKSDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01304103; iTF_01304104;
- 90% Identity
- iTF_01304104;
- 80% Identity
- -