Rchl007070.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- -
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000022.1:1246762-1249825[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2 1.8e+02 3.8 0.5 2 23 363 384 362 384 0.82 2 12 3.1 4.8e+02 2.5 0.2 1 23 390 412 390 412 0.82 3 12 0.47 72 5.1 3.4 2 23 471 492 470 492 0.92 4 12 0.089 14 7.3 2.4 2 23 499 520 498 520 0.86 5 12 9.9 1.5e+03 0.9 1.2 2 23 584 605 583 605 0.79 6 12 0.027 4.1 9.0 0.8 1 23 611 633 611 633 0.88 7 12 0.045 7 8.3 1.0 1 23 646 668 646 668 0.85 8 12 0.00048 0.073 14.5 1.0 2 23 676 698 675 698 0.95 9 12 0.0084 1.3 10.6 0.3 1 23 704 726 704 726 0.98 10 12 0.00058 0.088 14.2 0.9 1 23 731 753 731 753 0.98 11 12 0.00011 0.016 16.5 2.1 1 21 763 783 763 784 0.96 12 12 1.4 2.1e+02 3.6 1.7 2 11 860 869 859 872 0.86
Sequence Information
- Coding Sequence
- ATGAAGATATTAATCACCGATTCGAAGGGTGAACGAATATCGGTAACAATAGGTAACAACGGGAGCATCCAAGGGGTGAATAATAATCGTGAAAATAAAGAAGATCATCGAGTATGCATTAGTCCTAATGATTTACAAATTGAGAGACGAATGAACGCGAATGGAAATAACCTCCCTGTGAACAATCAGCAGCAACCTAACCGGGAGATTTCTGACTCTAATTCGCTCGCTGTGAAAGAAGAATTGAAAGAGTGCGGAGAACCATCTTCAATCACGTTTAAAGAAGTCTTGGGAGTCATTTCCGAGGGATATAAATCAGAACCATTGGAGCCAGACGTGGAAGAAGAATTTCACACAGAGACGGAAGGGATAAAGTTCGAGGGACTAGATCTGGCTAGAAAATATGAAACCATTTGTATTGACTCGGAGATTTTATTACACGAACAAAGCTCCCAAATTTCTGCTCCAATGATTCAATCGTCAAACGATATTAATTTACTGTGCAGACTCTGCGCCACACAGGGAAAGGATATGATTTCTATTTTCTCACCCAATGATGTTTGCAAAAATATAACAGAAAAGATTCAAGACTGTTTACCTATCTTGGTCGGAGAGACTGACAAACTTCCGAAACAAGTCTGCCGATTATGCTTGAAGAAGCTAGAACTGTTTCACAAATTTTACGAAACTGTAACGGAAGCGGAAAAACAGCTGAACATTCTTAGTGAGAAGATATCTGAAGGATTGAAAAATGCAGAAAAGATCAACGAGACTTTACCCCCTCAAGAAGTACAACTGGACAATGAAAAATCTGGGGAAAAATTACTGTTGGATAAAAAACCGACGATCGTTAAATTGTGTTCTCTTCCAGTGACTCTGAAGAGTCCTAAGCTTCTGAATACCGAGAAACAAGTAGCTGACAAAAATAATACAGATGAGGATATTATCTTCATGGGAGAAATAGCTGTTGTTGATGActtcgaagatgaagatgaggaagaggataaggataaggataaggatgaggatgagggggaagaggaggaggaagaggaagaggaggacgaggaagagTTTGATATAATAAAATGTCGAATTTGCGGACTGTTCTTTGGATCAGCTGAGAGCTGTTACATGCACGCATTGATTCATAATTCAGAAGATTACTATCCTTGTAGTATGTGTAATGAAATTCTCGACAATAGAGCAGACAGCTTTAAGCACAGCCTGCAGCATGTGGGGCGAGAAGAGATTCGAAAAAGAGCACCGTTACCGAATAAAAATGGATACAGTTACAACCTAGGGACGACTCGGATTACTGAAAGAGATAATGCTGACTCAAATATTATCCGCGCTCGAGGAGCAGCCGAGGATGAAACTTCTGCTGAGAAAGTCGACGAGGATATGGTAAAATGCAGAATTTGCGGAAAATATTTTGGGTCTGCTAGAAACTGCTACAAACATTCCACCAAACATGGTTCAGACAATTATTGGCCTTGTAGTATGTGCGAGAAAACATTTTCCAATGCAACAGAACACTGGAGGCACAGCCATCAGCATACTGTCACTATGAAGCGTCAGCCATGGGGATCTGTGCTCGCGACAATGCTGTCTGATATCAACCCAAGATCCCCGTCGGATACAGGAAGCGAAAGGCTTTCCAATAGCACGAAAGCAACAGCTGGAAAAGATGAAACAACGGTCGAAAATCAAGCTTCTATTGAGAATAGTAATGGCAAGAATAGAATAAAATGTCGAATTTGTAATGCCACTTTTCTTGACACTGGAAGCTGCTTTAGTCATGCAAGAGTTCACATCAAGCCACACTACTACCCCTGCGTAATGTGCCATAAAATATTCACAACCAGAAACGAATCGTGGAAACATGCCTTGGACCATGTAAAGGAGAACAATCGGGAGAAACAGCCGCCGGTATACATGTGCCTAACTTGTGGAAAAAAGTTTGTGACAGAAGAAAGATTAAGGTTTCATGAACTCTACCATAATCCAAATAAGAGACCCTGCTACTGTGAAGAATGCGACAAAATACTGGCTACAGAGAGATCTCTGTATCGTCATATGCTCCGTGTACACCAACGATCCAAGAAATACACTTGCGACATATGCAATGAGTGGTTAAGGGACCAATCGCAGCTAGATTCTCATCGATTGAAACATACTATCAAACGATTTGAATGTTCTGTCTGCAGGAAAAGCTTCTTATCAAATGATCAGTTGGAATTGCACAAGCGAGAGCATCGTCATTATCTACGGAGCAAAGATATTTTTTCTTGCTTCTATTGCGGGAAGACATTCTTGCAGAAATCTCATCTGTCTGATCATATTAGAAATAAGATTGATGAATGTCCATATAATATCTTCTCGAGAACGAGCAGTGATGATAAGGGCAGAAATAAAGATGAAACAACTCTCACGGCCGGCGGAATATCTAATTCAAAAAATTCTTGTACGGAAAAGAAAAGACCATCCGATTCTTCTCTTTCCAGTGAATTATTCAGAGTAAAAAGAACGAAAACTGAAAATCCGCGGGCTATTTATATCCATGGTAAACAGTGCCAATGCGATGTTTGCGAAAAAAAATTCAGAATGCCAAATATTACGCAAATAGAACGGATAACTCGAAATAGCATGAAATAA
- Protein Sequence
- MKILITDSKGERISVTIGNNGSIQGVNNNRENKEDHRVCISPNDLQIERRMNANGNNLPVNNQQQPNREISDSNSLAVKEELKECGEPSSITFKEVLGVISEGYKSEPLEPDVEEEFHTETEGIKFEGLDLARKYETICIDSEILLHEQSSQISAPMIQSSNDINLLCRLCATQGKDMISIFSPNDVCKNITEKIQDCLPILVGETDKLPKQVCRLCLKKLELFHKFYETVTEAEKQLNILSEKISEGLKNAEKINETLPPQEVQLDNEKSGEKLLLDKKPTIVKLCSLPVTLKSPKLLNTEKQVADKNNTDEDIIFMGEIAVVDDFEDEDEEEDKDKDKDEDEGEEEEEEEEEDEEEFDIIKCRICGLFFGSAESCYMHALIHNSEDYYPCSMCNEILDNRADSFKHSLQHVGREEIRKRAPLPNKNGYSYNLGTTRITERDNADSNIIRARGAAEDETSAEKVDEDMVKCRICGKYFGSARNCYKHSTKHGSDNYWPCSMCEKTFSNATEHWRHSHQHTVTMKRQPWGSVLATMLSDINPRSPSDTGSERLSNSTKATAGKDETTVENQASIENSNGKNRIKCRICNATFLDTGSCFSHARVHIKPHYYPCVMCHKIFTTRNESWKHALDHVKENNREKQPPVYMCLTCGKKFVTEERLRFHELYHNPNKRPCYCEECDKILATERSLYRHMLRVHQRSKKYTCDICNEWLRDQSQLDSHRLKHTIKRFECSVCRKSFLSNDQLELHKREHRHYLRSKDIFSCFYCGKTFLQKSHLSDHIRNKIDECPYNIFSRTSSDDKGRNKDETTLTAGGISNSKNSCTEKKRPSDSSLSSELFRVKRTKTENPRAIYIHGKQCQCDVCEKKFRMPNITQIERITRNSMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -