Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: -
Assembly: GCA_944452905.1
Location: CALYCC010000005.1:1683413-1691976[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.3 2e+02 3.7 1.0 2 21 194 213 193 214 0.93

2 19 6.5e-05 0.01 17.2 0.8 2 23 222 244 221 244 0.92

3 19 0.18 28 6.3 3.2 1 23 256 279 256 279 0.90

4 19 3.5 5.5e+02 2.3 0.2 2 10 801 809 800 814 0.88

5 19 3.2 5e+02 2.4 4.5 2 23 830 851 829 852 0.94

6 19 0.01 1.5 10.3 1.6 1 23 971 994 971 994 0.95

7 19 1.3 2e+02 3.7 0.5 5 23 1041 1060 1040 1060 0.88

8 19 0.02 3.1 9.4 0.1 1 19 1141 1159 1141 1160 0.96

9 19 0.00053 0.081 14.3 2.7 1 23 1169 1191 1169 1191 0.96

10 19 0.00088 0.13 13.7 1.4 1 23 1200 1223 1200 1223 0.91

11 19 0.00027 0.042 15.2 2.6 1 23 1305 1327 1305 1327 0.98

12 19 0.39 60 5.3 2.8 1 23 1339 1362 1339 1362 0.88

13 19 5.2 8e+02 1.8 0.5 1 23 1481 1503 1481 1503 0.90

14 19 0.93 1.4e+02 4.1 0.1 2 20 1570 1588 1569 1590 0.90

15 19 0.0028 0.42 12.1 3.6 2 23 1598 1619 1597 1620 0.95

16 19 0.011 1.7 10.2 0.2 2 23 2101 2122 2100 2122 0.97

17 19 0.0084 1.3 10.6 0.1 2 20 2127 2145 2126 2148 0.94

18 19 0.0013 0.2 13.1 0.7 1 23 2228 2250 2228 2250 0.98

19 19 0.67 1e+02 4.6 0.4 1 23 2258 2280 2258 2280 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.3	2e+02	3.7	1.0	2	21	194	213	193	214	0.93
2	19	6.5e-05	0.01	17.2	0.8	2	23	222	244	221	244	0.92
3	19	0.18	28	6.3	3.2	1	23	256	279	256	279	0.90
4	19	3.5	5.5e+02	2.3	0.2	2	10	801	809	800	814	0.88
5	19	3.2	5e+02	2.4	4.5	2	23	830	851	829	852	0.94
6	19	0.01	1.5	10.3	1.6	1	23	971	994	971	994	0.95
7	19	1.3	2e+02	3.7	0.5	5	23	1041	1060	1040	1060	0.88
8	19	0.02	3.1	9.4	0.1	1	19	1141	1159	1141	1160	0.96
9	19	0.00053	0.081	14.3	2.7	1	23	1169	1191	1169	1191	0.96
10	19	0.00088	0.13	13.7	1.4	1	23	1200	1223	1200	1223	0.91
11	19	0.00027	0.042	15.2	2.6	1	23	1305	1327	1305	1327	0.98
12	19	0.39	60	5.3	2.8	1	23	1339	1362	1339	1362	0.88
13	19	5.2	8e+02	1.8	0.5	1	23	1481	1503	1481	1503	0.90
14	19	0.93	1.4e+02	4.1	0.1	2	20	1570	1588	1569	1590	0.90
15	19	0.0028	0.42	12.1	3.6	2	23	1598	1619	1597	1620	0.95
16	19	0.011	1.7	10.2	0.2	2	23	2101	2122	2100	2122	0.97
17	19	0.0084	1.3	10.6	0.1	2	20	2127	2145	2126	2148	0.94
18	19	0.0013	0.2	13.1	0.7	1	23	2228	2250	2228	2250	0.98
19	19	0.67	1e+02	4.6	0.4	1	23	2258	2280	2258	2280	0.87

Sequence Information

Coding Sequence: ATGGCCCGGTGTATAATTTACAAGAGATCCTTGGATGTCAAGGTATTGCCCAGCTCTGGAAATTCGAATCATGAATTCCAGTTTGTCAATTTGGCGGAAATCAAGAAAGAAGTGGACAATGAATCGTTGGATATGGAAAGTGGACTAACTCCTGGTGCAACAGTTACTAATTCAAGTGGCCTCCATGACGATCACGATCTCCAGCTTCGTTCAGTGATTGCACCCGTACAGATGCTCGAAAGTGATCATGTCGCTCATTCAAAGCTTGTGATAAAATTCCGCGAGCCTAGGAAGGAATCAGAACAAAGCGTTGACATCCCTCAAAAAAGAAAAAAAACCGAAGACAGAGAGTCGGAAAATGAGATATCAACTATTCTCAAACCGAGACGTGATAGAAAGTCGGATTCGAGTTTTTTATCGAAAGTTTGTGTCACCCGGTCTTCGTCATTGACGCCAAGACCTTCGGACGGTATCCAAGAAACAAAGAGTACAACAGATCGCTTACAACGACCAGCCTCTGCCAGAAAAGGAAAACTAAATGTTCGGAAGACCGGCCAGTTGAAAAAGAACGTGAGCACCACATGTGAAAGCTGCGGGCTGCGTTTTCTGACAAAGAGAAAATTGCATGCACATGAACGCTACTGGACCCCTAAAGGAGCATTAAAATGCATTACTTGTGATCAAAGCTTCAGCCGCAGCTATCTACTAACACGTCACCTCAGAGTCATACACTTTGCGACACCAGCCATTAGACAGAACTATAAATTCGAATGCCACTTTTGCAATGATCGTTTCCAGAAAAAATCGAGCTTGATTGCACACGTGGTGCATCTCCATAACAAGCCAGTTGTATCGAAGAAGAAAAGTACAAACGGTAACAAAGAATCAGCTTCCAGTCTCAAATCAGGTGCCCAAAAGAAGACGAAAGGATCTCTAATGGAATCCAGAATAGATGATGATTCTGGTCTGATCAAAGATTCAAGTGGATTGGCTGGAAATTCATGTGACGCAAGCGGAAACTTGATCGATGGAGATTTGACAGTGCAACAGAATAAGCCGACAGCCAATCAATTTACTGGAGAAAAGTCCATAGACTTTGAGAAGGAGAAAGTCGATGGAAATTCAAATAGTAATCCGAAGAAAACCGATCGCTTGAAACAAAATAGAATTGTGATGAATTTGGATAAATCTAAGGACGAAAGAACGACAATGCTGCAACAAATTATATATTCAAACAACGATTCAACCAAAAAGTTTAATGAATCAAGAGTCGTTAAGGAAACAATTGATAATGGAGATAATGCATCCACGATGAATACAGGGGCTCTGATTCTACAGCGGTCTAATGAAGATAGAAGCCAAACGCAGCGTCGGAGTCAAACAGGTGTAGAAGAAAACGTTCAGCCACAAGGAATGGGAAATTTATTAGATCACCTAGGTAATGCGGTCGGTAACTGGCGCACAACTCAACCGTATAATCAGTCAGATAAGCAGGATTACATCTCTGGGAGTAGCAGTGCGAGTACCACGACTGACCTTGGAATTGCTGACATGCTCCGGTCTACAAGAAGCAGTATTCTGAAGTCGACTATATTGATTAGCTCTAAGCCGAATATTACAGATACCGGTGCATGCTCAGACCATAAGTTAACACAGGATGAAGACTCATCTTTTCAGAAAAAGAATATGAATGTCACGGAGAAGAATAGTTTTGCGAATGAAAGGCTGAAGATATTAACACAAGGTGGGAAATCGGACAAACAGGTAGGCCCAGTTCAATCGCATCAAGCATCAGAGGAGCTTGAGACTGCGAGGGGGAATGTTGATACTGAGGATGTAGCTAACGAATGTAATGATTTTGATATTGATATAATTCAAGTTAATGATTTTGGAGGAACTTCAGTGAAAATTGAGGATGAAGAGGTGAGTGGTGATGGCTGTGAACCGATTTCTCTTGACGTGGCTACTTCTTCCTCTAATATTTCTTTGACGAATTCGTTGAGCCCTAAATTCGACCGTGTGACCACTTTGAACAGTTGTAATACTCGGGATCATCCGAAAATGAAAGATTTAAGAGTTTCGCTGGTAAAACTAGAGAACATGTTAAATGTAGGGACTAAAACTCGTCCTCCAGAATCGTCTCCACTTGATAATTATAGCTCAGTCAAAACTGAAACACCTCATTGCGATCCGGGCGGGGAACAGTCTAAAAGCAATCTAGCATTACGACAATATCCTAGAAGGAAACATGATCGTCAGGTAGTTGACTCGGGATCAATAATTAGAAAACTCCGTGAGACTACTAACAAATTTCGGAGGGTAATTTCAAAAAAGAACGGACTGAGGGGGGGTCGGGAATTGGGACAGAGAACCACGAAGCGAGTTCAAGCACCGAAAAAACAATGTCATCTTTGCGATGAGGTGTTTCAGCATGTCTTGTTTTCGGCATTGCATTACTTAGAGGTACATACTGAAGTAGGATCACTTAAATGTTGTATATGCGATACAAGTTGGAAAGACCGGCGAAAACTACGAGGCCATCTATATAGTCATCACTCTGAAATCCCTGAAAGAAAATTACGGAAATTTTGTGTAACTTGTAAGAAACAATTGAGTATTTCTAGTTTAGGCCTATGTTGTCCGAATTGTAATGAGAATTCTAACGCCAGACATAGTAAGGAGGAAAAAGAAGTAGAGCAAGTTCCGAATGTAAAAGTTTCAATCAAGCATGATCACACGCAAGTTGTCGCGAAAGTTGATGGATTGGAAAATGGATCATTATTTGAAATATCGTCTGTATCAATGTCGAAAAAGAGAGCAAAAAGCAATACCCCTGTTGTTCACCATGAGTCCGCAAAAAATGACAAAATAGTTCTCACCCCGGGGGCTCGTAAGAAATTTGTCAAAAATTTCAATTGCTTCGTTTGTAATGGCGCGTTTTTCAAAAGTAGTCAGTTACGGCATCATCTTTCGGTAGCACATGCTGATGTAAAATATCGTAGAAGCAAAAGATACCAGAGCGTTTTCAAACTACAAACCTTGTCTTACTCAACTTCTCGCGATTGTAAACGAGGAAGTAGGAAGCGTAGCAGAGATGAGAATAACTTGCCAAATTTCAACATATGCGATTGTGCATTTACCGGTAAATTGTTACTGCGAGCACATATTGGACATTTTCATAATATACAAACTCGCGAAGCTGAGGAAAATGCGATTAATAAAGACGTTAGCACAGGAACTGAGCAGGTTTCTGAAAATATTGAACTTCCAGTAAGAACTGACATTATTTGCAATGATTCAAATGATTCAACAAATATCTCAACCATTCAAAAAGACGTAATCGCAGCCGACCATGCGGAGACGACAAGCGACGAACCGGCCGTGGTAGGTGAGATAATCAGGACGCATACTTCGAGTCGATATAAATGCGACATATGCAAGCTAAACTTTAACGATCCATACGCTATGTTAAATCATGAATGGGAGTATTCTAACGAAGGCACATTCGCATGTAATGTTTGTAATCGAAAGTTCACGACTTATTTTCTTCTGAAGAATCATAAGATTAAACATTTTCAAAGGAACGTGATTCGCGATTATGAATGCTACATTTGTAAGGAGGATTTCTCTAGAGCGGATCATCTGAACATCCATGGATTACATCTACACGGCCCTGCGTTTGTGTTGGCGAAAGGTTCTGGAACTGACGATATTCTTGATAACAGTATATCGGAGTTTGAAATAGATTCTGACCGCGACAGTGTGTTAAAGGAATCCACCGTCGACGATGGCTACGAACTCGTGGCGGGTTATCACAAAACAATTCAATGTGGGAAGATTCTATTGTTTAGGAAATTTGGACATAATAAGTCATCTACAGAATCGCCGCGACGAAATTCTAACGAAGATGCTTACAGCTGTTATTTCTGTCAAACAAGTTTTAGTTCATCAATTTTATTGAAAAGTCACATTAAGAAACATGACTATCGTCCGTATTACAATAATTCATCAAGATATCTTTGCCTGATTTGTAAAGATAAGTTCCGGACTAACGATCTTTTGAGGGCTCACGTTGTACATTGCCACACATCTGATCCACAAGAACAAAGTCTCAGTGGATCAAAAGAGTCCCGAATACATAGTGACATACAATCAAGTGATAACAAAAATGATAACACAACAGATAGTGTTGCTGCAAATTCAGCAATGGATGCGATTCAGAACCCGACATTTAGTTCTGTGATTGAGGAATCTGACTATCCCGAAATTATTTCACATATCGAGTTGAATTCAACGCCAGAGGAAGTAAAGTTTTTTACCGCGAAGGTAGAGGACGTTGAGGGATTACAGAAGTACATGTGTACCATTTGTATAGTGACATTTGATTCTGTTGAACAATTTGTAGAACATTTTGCCGCTACTCATGTAAAAAATGGGGCATTTTTGTGTACTTTTTGTGGTGCAAGATTTTTGCTCATGGTCGATCTGAAAGATCATACACTCAAGCACGAAAAGGAATCTAAGAAATACGTATGTTGCGATGAAAAGTTTCTCCTAGTCACAGACTTTGTTCGTCACCAGTCATCACATGACGGACGGATCGAAGAAGAACAAGATGAGCCTGACACACAGCTGTCACTATCAGTTGAACCTGAAGGTGGCTCTCGTAAGGAATTTAGTGACGAACCAAATGCCGCTGATCCATGCAAATGCGAAATTTGCGGCGAAATATTGATAGACTTTGAATCTATGCTAAAGCATTGGGACTCTTGTATTGATATGAATGGCTTACAATGTAATTTGTGCAAAGCTACGTTCAAGAGTCTCACTTCGTTCAGGGTACATCAGACGACACACCATCAAGGGAAGCTGGATGGTAATCCTATACAGAATCGACGGAGCCCTCGAGTGATCAGTGATCAAATAATTCAAGTGTCAATGCAAGACAGTATCATGCATGGCAATAAGCCCAGAACGATCAACAAATCAATGAATATGAATGTTACGAAGAAACTAGAAAGAGCTGTGGCCTTAACTAGTATATTACCGAAAAAGTATGAACCGTTAAAATCTGGAAATATTACGGTGAAACCACTTGCCAAAGAAGTCAATAATTTGAAAAATGTCAACAAATGCCATGTCAACGAACATCAAAAGAATAACGGAACTGGACCATGGCCGGAACTTAAACCGAATCAGGACGTACTATTGCCAAAACGGGGTAGTATGTCAAAGAAGTCTCCAAGAATGATATCAATTGAAAATTTTGACGCGAAAATTCACTGGCGAAAGCAAGACGATTCAACTACTCCAGTTTCTACTTTTCCTCAAGCAGTAAATTCAAGTACGCAAGCTCGTCAACTAGATAAAGAAGTTTCAAAGGATATTCCTTGCAGCGCGAATGAGAATCGTTCACTATACCATCTTCCAGTTCAAGGTGTTAACAATATTAGCAAAGTACACGTCGGATCAAATGACTCCAGTCTCAGATTACAACAGAATGAGTGTCAAGAACAAAAGTTAACGAGATCAGAAGCAATCCCTTCGAATATTGTTAACGATTTGAGCTCTATTTCATCGACGGCTCGTACATCCATTAATATTGATAACATGAAGTTCGCGTCAAGTGAATCTGGCGAAAAAACTCGGTCGAATGATTGTGGGCGCCAGGAATCATTGAATTTAATACCAGCATCTTCAAGTGCTGCTGACAATGCAGCCATTTTCATTTGTATTCAGCCTACAGCTGATTACTCCAATAATATAAACAATGCAATGATTTTACCAAGTGATTCCGGTCAAACAGTTCAGCCAAATGACAGCAGCAGTACGCTACCAACAAGCTTGGTACCATTTTCTCTGGATGCTGGGCCTAGTCCAGCGTATTTCTTATGCCTTACACCTGCTCCTGATAATTCTTCCAAGTGTATCACTCAAGAAGCTCCATTGAACGATTCTAAGCTCAAGTCTCAGCCAAATAATCATACCGGGAAGAAACTACCGACGATACTGAGAAAATCCCCAACCCTTGTTCCTAATCCAATTCATAATAACGATGTCCCACAAAAAGCTGTTTATTCGAATAAAAAGAAGAAACACAATGTCGTACCATATGATTCTACCTCACACACGCGTTTAATTTCTAATACGGTCATGAAAGCACCGAAGCTTCCCCCTGCTCCTAGTACCTCAACTAGCGGTAAACTATCCGAATCGGAAATAAGGGTAACGAACAGCATAGATATTCCTACAGACCAAAGCGCTTCCAACAAAGAACTTGCATCGAAAAAACAAATTGTCCGATGCAGTTACTGTAACTTACTATTTACGGAAGAAGCGAAGTTAATACAGCACATGGATTCGCACAAGAGAAATAATCAATGCCCTGCGTGTGGGTTAACGTTCTCAAACGAAAAAGCACTCCAGCTACATTTACCTGAACACAAAAGCTCGACGTGTACCAAATGCAAGATGATCGCTTTCTTTAGTGACTCGCTTACCCGGCCTAAAGGGGCAGCGAAGTACTGCACTGCGTGTGCCACCCTACTGCCGTTACCTAAACGCAGGAATACTCGTTTCGCAAATAATTTCCCGCATAAAATCATGAAATGTGGTATATGCATGGACACATTTGGTACGATGTCGCAAATGACTGATCACTTCAAGAAGTTTCATTCGGATTTTGTGTGTGGTACCTGCGAATCTAGATTCAGTACAAAAGTCAGCTTATACGGCCATTTGCGGACTCATGGTAGCAAAAATCCTGCCTTATTTCAATGCAAAACTTGTAAAAAATATTTTCTCGACGGAATTGATCTGGCGGCACATTCATTGTCTCACTGA
Protein Sequence: MARCIIYKRSLDVKVLPSSGNSNHEFQFVNLAEIKKEVDNESLDMESGLTPGATVTNSSGLHDDHDLQLRSVIAPVQMLESDHVAHSKLVIKFREPRKESEQSVDIPQKRKKTEDRESENEISTILKPRRDRKSDSSFLSKVCVTRSSSLTPRPSDGIQETKSTTDRLQRPASARKGKLNVRKTGQLKKNVSTTCESCGLRFLTKRKLHAHERYWTPKGALKCITCDQSFSRSYLLTRHLRVIHFATPAIRQNYKFECHFCNDRFQKKSSLIAHVVHLHNKPVVSKKKSTNGNKESASSLKSGAQKKTKGSLMESRIDDDSGLIKDSSGLAGNSCDASGNLIDGDLTVQQNKPTANQFTGEKSIDFEKEKVDGNSNSNPKKTDRLKQNRIVMNLDKSKDERTTMLQQIIYSNNDSTKKFNESRVVKETIDNGDNASTMNTGALILQRSNEDRSQTQRRSQTGVEENVQPQGMGNLLDHLGNAVGNWRTTQPYNQSDKQDYISGSSSASTTTDLGIADMLRSTRSSILKSTILISSKPNITDTGACSDHKLTQDEDSSFQKKNMNVTEKNSFANERLKILTQGGKSDKQVGPVQSHQASEELETARGNVDTEDVANECNDFDIDIIQVNDFGGTSVKIEDEEVSGDGCEPISLDVATSSSNISLTNSLSPKFDRVTTLNSCNTRDHPKMKDLRVSLVKLENMLNVGTKTRPPESSPLDNYSSVKTETPHCDPGGEQSKSNLALRQYPRRKHDRQVVDSGSIIRKLRETTNKFRRVISKKNGLRGGRELGQRTTKRVQAPKKQCHLCDEVFQHVLFSALHYLEVHTEVGSLKCCICDTSWKDRRKLRGHLYSHHSEIPERKLRKFCVTCKKQLSISSLGLCCPNCNENSNARHSKEEKEVEQVPNVKVSIKHDHTQVVAKVDGLENGSLFEISSVSMSKKRAKSNTPVVHHESAKNDKIVLTPGARKKFVKNFNCFVCNGAFFKSSQLRHHLSVAHADVKYRRSKRYQSVFKLQTLSYSTSRDCKRGSRKRSRDENNLPNFNICDCAFTGKLLLRAHIGHFHNIQTREAEENAINKDVSTGTEQVSENIELPVRTDIICNDSNDSTNISTIQKDVIAADHAETTSDEPAVVGEIIRTHTSSRYKCDICKLNFNDPYAMLNHEWEYSNEGTFACNVCNRKFTTYFLLKNHKIKHFQRNVIRDYECYICKEDFSRADHLNIHGLHLHGPAFVLAKGSGTDDILDNSISEFEIDSDRDSVLKESTVDDGYELVAGYHKTIQCGKILLFRKFGHNKSSTESPRRNSNEDAYSCYFCQTSFSSSILLKSHIKKHDYRPYYNNSSRYLCLICKDKFRTNDLLRAHVVHCHTSDPQEQSLSGSKESRIHSDIQSSDNKNDNTTDSVAANSAMDAIQNPTFSSVIEESDYPEIISHIELNSTPEEVKFFTAKVEDVEGLQKYMCTICIVTFDSVEQFVEHFAATHVKNGAFLCTFCGARFLLMVDLKDHTLKHEKESKKYVCCDEKFLLVTDFVRHQSSHDGRIEEEQDEPDTQLSLSVEPEGGSRKEFSDEPNAADPCKCEICGEILIDFESMLKHWDSCIDMNGLQCNLCKATFKSLTSFRVHQTTHHQGKLDGNPIQNRRSPRVISDQIIQVSMQDSIMHGNKPRTINKSMNMNVTKKLERAVALTSILPKKYEPLKSGNITVKPLAKEVNNLKNVNKCHVNEHQKNNGTGPWPELKPNQDVLLPKRGSMSKKSPRMISIENFDAKIHWRKQDDSTTPVSTFPQAVNSSTQARQLDKEVSKDIPCSANENRSLYHLPVQGVNNISKVHVGSNDSSLRLQQNECQEQKLTRSEAIPSNIVNDLSSISSTARTSINIDNMKFASSESGEKTRSNDCGRQESLNLIPASSSAADNAAIFICIQPTADYSNNINNAMILPSDSGQTVQPNDSSSTLPTSLVPFSLDAGPSPAYFLCLTPAPDNSSKCITQEAPLNDSKLKSQPNNHTGKKLPTILRKSPTLVPNPIHNNDVPQKAVYSNKKKKHNVVPYDSTSHTRLISNTVMKAPKLPPAPSTSTSGKLSESEIRVTNSIDIPTDQSASNKELASKKQIVRCSYCNLLFTEEAKLIQHMDSHKRNNQCPACGLTFSNEKALQLHLPEHKSSTCTKCKMIAFFSDSLTRPKGAAKYCTACATLLPLPKRRNTRFANNFPHKIMKCGICMDTFGTMSQMTDHFKKFHSDFVCGTCESRFSTKVSLYGHLRTHGSKNPALFQCKTCKKYFLDGIDLAAHSLSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -