Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: YPR015C
Assembly: GCA_944452905.1
Location: CALYCC010000014.1:3090917-3093003[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00011 0.018 16.4 0.3 2 23 315 337 314 337 0.92

2 4 0.00055 0.084 14.3 0.0 2 23 363 385 362 385 0.97

3 4 3.5e-05 0.0054 18.1 0.8 3 23 411 431 410 431 0.99

4 4 7.7e-07 0.00012 23.3 1.7 1 23 437 460 437 460 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00011	0.018	16.4	0.3	2	23	315	337	314	337	0.92
2	4	0.00055	0.084	14.3	0.0	2	23	363	385	362	385	0.97
3	4	3.5e-05	0.0054	18.1	0.8	3	23	411	431	410	431	0.99
4	4	7.7e-07	0.00012	23.3	1.7	1	23	437	460	437	460	0.95

Sequence Information

Coding Sequence: ATGGCTGTTGCTGCATCAGAAAATTACCAGCTAAAGTGGCACAGCTATGGAGCTCATCTCCACAGCTCAGTCGCTACTTTACTTCACTCAGAATCATTCGCAGACGTCTTGTTGGCAACATCGTGCGGTAGGCACGTTGCAGCTCATCGTTTCGTTCTGGCGGCCTGTTCTTCTTACCTCAGTCACATATTCCAAACTTGTCACTTTGGAGCTAACACAAATGCACCAATAATTGTGGTCTTGCCTACCGAAATTGGATACCGAACTTTGAAGATCTTGATTCAATATATGTACAGCGGTGAGGCAACGGTAACCAATGACCAACTTGAGGGTGTATTGAAAGCTGGTGATATTCTAAGAGTTCGTGGCTTATGGAGATCGAACAACGGGAGTAAGAAGGAAAATATACAGTCAAACAATCAAAAAGTTGAAAGAGATAAAAAGGAGGGGGCTGCCCCTCTGGCCGGACAGATACAGAAAATAAAATTGGTTCAACCAATGCCTGATAAAATTGTTGAAAATGTCCAACAGCCGGTTATTGCAACTCAGGCTAGCACTGTCCCTATACAAAAATCATCTGACGTCAGCAAAGTAGTCGATAAAAGTGAAGAGAAGAACAAAGATATCGAGTGTTCTAAAACACTCGAAGATAACAAAAATGATGAGGAGAGTAAAAACAAAGGAAATCCTGAAATCAATTCCAAAAAGAGAAAAAGCGTCAACAGCGAAACAGAGTCCAATAGGACGAGGAGCGAAGCTGGTGATAATGAACAGGATGAATTGAACTTAGAGCTTCTGGTAAAGGACGAACCAATTGACTGGGAGGAAACAATTGACCCATCTGAAGCCTTGACAATTGATCATGAAATCGACATTAAGCCGGAGATTGTACACAGTGCAGATGAAGAGGGAGAAATGGAAGAAGAGGAATACACACCTCTAACTTGCGATATGTGCAGCCAAACGTTTAACAGACCGTCTGATTGGGTTCGGCACATAGAATTCACACATGCTGATATGACGGAAAATAGAAGAAGGAAACGAAAGGGTGATGCTGACGATGATAGCAAAGACTTTCCACCGCTGAAATGTGACCTCTGTGGTAATATGTATCCTACACCTCAGGAATGGGTGCGACATATACAAACAGAACATACCGAGGAGCAATTGGCCCTAATGAACAACTCGGCACCTCCAAAACCAAAGAGAGTTCACAGCCATCAAAAGTTATGCAACATCTGCCAAAAAGTATTCCCTAGCCATGCATCGATGGTTATTCATCAAAGAACACACACTGGTGAAAAACCATTTCTATGTTCATATTGCAAAAAAGGTTTCAACGTCAAAAGTAATTTATTACGACATTTGCGAACGTTGCACGACAAGTTTGTACATCCTAGCTTATACGGTAGTAATGGTAATAAAAATGCTTAA
Protein Sequence: MAVAASENYQLKWHSYGAHLHSSVATLLHSESFADVLLATSCGRHVAAHRFVLAACSSYLSHIFQTCHFGANTNAPIIVVLPTEIGYRTLKILIQYMYSGEATVTNDQLEGVLKAGDILRVRGLWRSNNGSKKENIQSNNQKVERDKKEGAAPLAGQIQKIKLVQPMPDKIVENVQQPVIATQASTVPIQKSSDVSKVVDKSEEKNKDIECSKTLEDNKNDEESKNKGNPEINSKKRKSVNSETESNRTRSEAGDNEQDELNLELLVKDEPIDWEETIDPSEALTIDHEIDIKPEIVHSADEEGEMEEEEYTPLTCDMCSQTFNRPSDWVRHIEFTHADMTENRRRKRKGDADDDSKDFPPLKCDLCGNMYPTPQEWVRHIQTEHTEEQLALMNNSAPPKPKRVHSHQKLCNICQKVFPSHASMVIHQRTHTGEKPFLCSYCKKGFNVKSNLLRHLRTLHDKFVHPSLYGSNGNKNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01413504;
90% Identity: iTF_00175343;
80% Identity: iTF_01303592;