Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: -
Assembly: GCA_944452905.1
Location: CALYCC010000100.1:161905-164790[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.3e-05 0.002 19.4 1.7 1 23 260 282 260 282 0.97

2 9 0.13 21 6.8 0.1 1 19 288 306 288 311 0.81

3 9 9.7e-05 0.015 16.7 1.0 1 23 414 436 414 436 0.97

4 9 8.2e-05 0.013 16.9 1.3 1 23 442 464 442 464 0.96

5 9 1.5e-05 0.0023 19.2 3.0 1 20 470 489 470 492 0.93

6 9 0.00031 0.048 15.1 3.8 1 23 498 520 498 520 0.98

7 9 0.00018 0.027 15.8 3.8 1 23 526 548 526 548 0.99

8 9 7.9e-07 0.00012 23.2 0.9 1 23 554 576 554 576 0.98

9 9 0.085 13 7.4 3.0 1 23 591 613 591 614 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.3e-05	0.002	19.4	1.7	1	23	260	282	260	282	0.97
2	9	0.13	21	6.8	0.1	1	19	288	306	288	311	0.81
3	9	9.7e-05	0.015	16.7	1.0	1	23	414	436	414	436	0.97
4	9	8.2e-05	0.013	16.9	1.3	1	23	442	464	442	464	0.96
5	9	1.5e-05	0.0023	19.2	3.0	1	20	470	489	470	492	0.93
6	9	0.00031	0.048	15.1	3.8	1	23	498	520	498	520	0.98
7	9	0.00018	0.027	15.8	3.8	1	23	526	548	526	548	0.99
8	9	7.9e-07	0.00012	23.2	0.9	1	23	554	576	554	576	0.98
9	9	0.085	13	7.4	3.0	1	23	591	613	591	614	0.96

Sequence Information

Coding Sequence: ATGGAATCCTCTGAATTATCCTGTCTCGTATGTAACACGAAATTAGAGGTTACATCCTGCGTGAATATTTTCTATACATCCCTACCTCGGAATGGAACACAACTGGGTAGTTTCATTCTGCAAGTACTACGTTGTCTCGAGTCGGACCTGAGAAGCTCCTATGTCTGTTCCCAATGCTATAGTTTGTTTCAAATGTTAGAACAGGCCCAATGGACAGCGGCTAATATTCGTAACGAAATTTTAAAAGTCTACGAATCTAGTAGCAAGAGAAAAGATCTCAGGACGATTAACAGCGACAACACAGAGCTTATTGATATTGGAAATAAATGTTTTGCCCCAAACTTTAGCCAGGAAGATAAATTGAAAATTACAAACACTATAAGCCAGCTGAAAAATATTTCCTCTTTAAATTCCTGCAAAGATTCACAAAGCAGATTGGCACAAAGCAGAGAAACTCACATTAATGAAAATATAAATCAATGCATTAGTAAGATTTTGAACAAAAGTATGAAGCTGAATGTGGATGATTCTGGACTGCCTGTATGCTCGAATATCGATTCTTCTAAAGATGAAATGAATCTTAGGGACAGGAGAAAATTCGAAGTTAAAATTGAGAAATATCATTTCGGAGATGGCGACCACGTTTCTGGTAACCAAGCATCCAGCGAGATGCTAAACGAGACTGAGAGAATTTTGAAAGAAGAGAATGTTAATGGTTTAAGCAGAAATGAAGTTAGCCTGAATTTAAATAGACAAGAAAAAATGGCATTGTATACTCATCAGTGTAGGGTCTGCGGTAGGATGTTTAAACAGGCGGACGATCTGCAGTCACATTCGTTGAAACATGGCGGATCCAGACCCTATAAATGCGGGATTTGTAAAGAGAGATTTGGCAGCTTATCAGCAGCTGATATTCACGCCGTTCAAGAACATCCCGGAGCCAAAGACGCCATAAGTATTGCTACCGAACCTCAGGAAGGAGAACTTGCAGATTTTATTAACGATAATCACGGACTTTTTCCTGAAGAATTACTCGGAATGTCGGATAATGAAGAACAGGACGATTTCGAATGGAAAGAAGCAGTTCATAATGCTGAAAAAATCGCAGATAATGAAGATCATATTTCGCGTAACGAATCGATGCAAATGCTCGACAATTCCAAACAATTGACATCGAGTTCTGAAAAGATAACTTACAAGTCAGGAGGAATATCAAAGTATAGTTTAAAGCCGTTGAAACATCCTTGTCCGACTTGCGGCAAAAAGTGGAGAACATCTGCAGAATTGAAAACTCATTTGAAATCACATTCGAATTTGAGGCCCTATATGTGCGAGAAATGCGGCCAAGCTTACAAGCACAAACATGCCTTAGAGATTcacgttggaatgcacaacggtattaatccatttcagtgcagtttttgcaataaatgttttacacaaaagggagctctgatgagacacttgccgatgcacacaggagaaacaccctatcaatgcgaactatgcggaaaacgctttgtacatcacacgtcgtacaacatgcatgcgctatcacacactgggaagaaatcctatcagtgtcatGTGTGTGATCTATCGTTATTATCAACATCACATTTAAAGCGTCATATGAGAGTACACACCGGGGAAAAGCCTTACAGTTGTACATTATGCGGTAAGCGGTTTGCTGAACGATACAACTTATTCGCTCATCAGAAGATACATGACCCAGCGGAGATACTGGCCAAAGAGACGAAAAAGATACAGTACAAATGCAAGCAGTGTGCAATATTATTTGATAAGAAGCAAAAGCTGGATGATCATTTGAGACAGCATCACAGCGTAGAAACTGAAAGTACAAGTAATAGGAAGTGGGTGAGTAGCGGAAATAGCATCGAAAGTCCGATATCAAAATTTAGTACATTAGAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAGAATATCATCAAGGTAGATGTTCGTGATAATATAACAGTTGACCAAGCCTGGCAGCATGCTGGGTATACAAAATTAGAGAGTATTGAAAGCGATCCAAAGATATCTCAATCACAAAATACATTTCAAATGGGCACAAATCCATTGACAGTAGCCTTAGAAAATCACAAAATGTTGATTGATATGGGTTGCAATCGAAACTTAATTCCAAACATAGCATTACCTAGTGGAAATCAAATTTCAATGGAAAGAACACAAATCTAA
Protein Sequence: MESSELSCLVCNTKLEVTSCVNIFYTSLPRNGTQLGSFILQVLRCLESDLRSSYVCSQCYSLFQMLEQAQWTAANIRNEILKVYESSSKRKDLRTINSDNTELIDIGNKCFAPNFSQEDKLKITNTISQLKNISSLNSCKDSQSRLAQSRETHINENINQCISKILNKSMKLNVDDSGLPVCSNIDSSKDEMNLRDRRKFEVKIEKYHFGDGDHVSGNQASSEMLNETERILKEENVNGLSRNEVSLNLNRQEKMALYTHQCRVCGRMFKQADDLQSHSLKHGGSRPYKCGICKERFGSLSAADIHAVQEHPGAKDAISIATEPQEGELADFINDNHGLFPEELLGMSDNEEQDDFEWKEAVHNAEKIADNEDHISRNESMQMLDNSKQLTSSSEKITYKSGGISKYSLKPLKHPCPTCGKKWRTSAELKTHLKSHSNLRPYMCEKCGQAYKHKHALEIHVGMHNGINPFQCSFCNKCFTQKGALMRHLPMHTGETPYQCELCGKRFVHHTSYNMHALSHTGKKSYQCHVCDLSLLSTSHLKRHMRVHTGEKPYSCTLCGKRFAERYNLFAHQKIHDPAEILAKETKKIQYKCKQCAILFDKKQKLDDHLRQHHSVETESTSNRKWVSSGNSIESPISKFSTLENQNQNQNQNQNQNQNIIKVDVRDNITVDQAWQHAGYTKLESIESDPKISQSQNTFQMGTNPLTVALENHKMLIDMGCNRNLIPNIALPSGNQISMERTQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00060632;
90% Identity: -
80% Identity: -