Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: prdm10
Assembly: GCA_944452905.1
Location: CALYCC010000001.1:2346327-2350756[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0027 0.42 12.1 0.6 2 23 487 508 486 508 0.96

2 14 1.5e-07 2.3e-05 25.5 2.0 1 23 542 564 542 564 0.98

3 14 0.0075 1.2 10.7 1.9 1 23 572 595 572 595 0.97

4 14 0.019 2.9 9.5 0.1 2 23 613 634 612 634 0.95

5 14 0.23 35 6.0 0.7 2 23 647 668 646 668 0.91

6 14 0.066 10 7.8 5.4 1 23 685 707 685 707 0.91

7 14 0.011 1.7 10.2 2.0 2 23 716 737 715 737 0.96

8 14 0.013 2.1 9.9 0.1 1 23 744 766 744 766 0.98

9 14 0.0002 0.03 15.7 3.8 1 23 773 795 773 796 0.95

10 14 0.0015 0.23 12.9 3.9 1 23 801 823 801 823 0.98

11 14 6.4e-05 0.0098 17.2 4.4 1 23 829 852 829 852 0.96

12 14 0.0018 0.27 12.7 1.7 1 23 885 908 885 908 0.97

13 14 0.00047 0.073 14.5 1.9 1 23 930 953 930 953 0.95

14 14 0.004 0.62 11.6 3.4 3 23 991 1012 991 1012 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0027	0.42	12.1	0.6	2	23	487	508	486	508	0.96
2	14	1.5e-07	2.3e-05	25.5	2.0	1	23	542	564	542	564	0.98
3	14	0.0075	1.2	10.7	1.9	1	23	572	595	572	595	0.97
4	14	0.019	2.9	9.5	0.1	2	23	613	634	612	634	0.95
5	14	0.23	35	6.0	0.7	2	23	647	668	646	668	0.91
6	14	0.066	10	7.8	5.4	1	23	685	707	685	707	0.91
7	14	0.011	1.7	10.2	2.0	2	23	716	737	715	737	0.96
8	14	0.013	2.1	9.9	0.1	1	23	744	766	744	766	0.98
9	14	0.0002	0.03	15.7	3.8	1	23	773	795	773	796	0.95
10	14	0.0015	0.23	12.9	3.9	1	23	801	823	801	823	0.98
11	14	6.4e-05	0.0098	17.2	4.4	1	23	829	852	829	852	0.96
12	14	0.0018	0.27	12.7	1.7	1	23	885	908	885	908	0.97
13	14	0.00047	0.073	14.5	1.9	1	23	930	953	930	953	0.95
14	14	0.004	0.62	11.6	3.4	3	23	991	1012	991	1012	0.98

Sequence Information

Coding Sequence: ATGGATCCTGGGGGCCCTCCTGAGGGGGCCCCTGGCGACCCCTTGGAAATCCAAGGCATTGACAAAGCAGTCGACGTCGTTGATAACTGGCAATCCGATCACAACACGTCCGCAGATCAACCTAGAAAGATGAACAACAACAGACTGCTATTTCTCACAGTCGAATACGTCGAGGATAATTCAAAGGATTATTCCCGCATATTTCCCGCCTATGAACAAGTCTCCTTTTCCCCTCAAGCCTCATCTCCGCTGTCGGATTTCGAGCATCGAGTCAGTCCGCTGGATCCTAACATGAGTTCGGCGGCAAGATATTCTCCAACTCCTGTCCAACTCCCCCCATCTCCTTTCCATAACTCTGTTGTGGTTCTCCAAGGCCCTTCTTCGCCGCTCATTTCCACCTCGGACCAGAGCGTTAGACCGACTATAAACTACGTTACGCAATTAAACGACCAGTCGGTACCCCAAGTCGCTGCGCAGTCTGATAATAACTCAGATTTTGTTGTCACCGGGAACGAGGAGGGTCTCGATGCAGGAGTCAGCGGGGAATTGATCTTGATGCAAGGCGCAGCACCCGAGTTGGAGAATTCAGCCGCACCATTGATGCTGGCCGGTATACCAAGCGCGGATTTTGCTCTGGCTAGAGATTTCCTAGTCACCCACGACGAGCAGCTTAACGTAATGACAGCGTACAAAAATCAGACGCTGGAAATTGAGGAGACGAAAGTTATGAAGCTGGAAGTTAAAGTTGGGGAGGATTCGCAGACGGCCGTTGTAGATAGAGAGGGAAATTCTATAGCGCAGATTCTCAGCGGCAATAATAACGATGATTTGTTGAAATCGAGCGATAAAAAGGGGGTCAGGAGATCAAAGAGACAAATTAATGACAAGAAAATGCTCTGGTGCAAGGAATGTGATGCGGATTGTGTGAATGCTGAAAATTGCACGGTACACAACGTGCAGACGATCGCAGACCAGCCTGTTCCTTCGAGAGCTAGAGCAACACTGCCTGGTTCACACCTTACGATAAATAAGCTACCGATGTCTAGCACTCTGCCCGGTGGATCGATCTACGGTGTGTTTGCTAAACGCAATATTCCTAGACGGACGCAATTCGGTCCCATTGAAGGAATTTTGTGCTCTTATGAGGGAATCGTGGCAGAAAATACATTGCCGCTATTGTACCAAACGGATAACGGAGAGTTTTTGAAGATAGATGTCTCTGACGAAAATGCTTCAAATTGGATGCGCTTTGTCCGACCTGCTTCAACGTACAAAGAACAGAATCTTATAATCAGCCAACAGAGCGAAGGCATCATGTTTCTTACTGTGAGAAATATTTCACCTAAAGAAGAGCTGAAGGCTGGTCCTAGCCCGGAATATGCGAACGTCAGAAGTCTTTCTGTGCTTATACCGAATCCAAAAGATCAAACTGAATTAAACAACGAGCGAAACCCCTGGCCCTGTTTCGAGTGCAATCAGCGATTTCTTACGTCAGAAAAGCTTCAGAAACATCTGAATGTACATGATGGACCAAGAATCGATGGGAAATCTCGTAATAAACGTAAAAAGATTCATACTCCGTCGAACAAACTTTTCAAGATTGTAGATGGTCAAACAGTGTTATACACATGTCCCCACTGTTCCAAGGTATTCCCTCGAAGTTACAGCCTAAAGCGTCATCTGTTGATTCATCCTGGAGCGAAGGCTCCGCGTTACGAATGTCAAACTTGTGGTGAAAATTTCTTACACCCTTACAATCGCAGTCGTCATATCAAGATATTCCACAGCGGAAGTTCAAACGAGAAAGAAAATAACAAGCAGAATACATCGGAGTGGAAATGCCTGAATTGTAACTTGATATTCACTAAGGCTGCTCTCCTCAATTTACACTCTCTTATTCACAGTCCCGATAATCTAAAGACCGAGGGTCAGTCTACTAGCTGTCCTCAGTGCAGTTCTCAATTCGATAAACAAAACGAGCTTGTTCACCATGTCGGCGAACATGGGAGACAACAGGTGGAAAAAATAGCAAAACAGACACCCTTAGCAGCTCACAAATGTTCAATGTGCTACAAACGATTTGCCACCAAAGTACGATTGCAGCAGCATTGCTTGGTACATGGTGACGATGATCAGAAGCCATTGCCGTGTAATATTTGTCTGAAAAGGTTTATGAACAATTCTGCACTGTCTTGTCACCTGAAAACTCACAGAGAAGACAAGCAAATCTTCGAATGTCCGATGTGCAGGCAATTATTCGACCAAGTATTGATGCTCAAGGATCATATCGAGACCCATCGAAGCGAAGATGGAATCTTTAATTGCCCACATTGCCCTCGATCGTTCACGAAATACTCAGTTATTAGGAAACATATCAGAGCCCATCACTGCGAGAGAAAACACAAGTGCCAATTTTGCACAAAGCGTTTTCCCACTGTCGATAAATTGAGAATGCATTTGCTTCGACATTCGGATCACAGAGAATTTCACTGCGCTAACTGCGATAAACAGTTCAAAAGAAAAGACAAGCTCAAAGAACATATGACTAGAATGCATAACGCCGAACGAGAAAGCCAGCAACAGTTGGCTCAGGGACTACAGGCGAAGAAATTTATTCCCAAGGTCAATCCAACAGACTACAATCGTTTCATCTACAAATGTCATCAATGTCTAGTGGGCTTCAAAAGACGAGGGATGCTTGTGAACCATTTGGCAAAACGGCACCCGGACGTCCCTCCGGAATCTGTACCCGAACTAAATTTACCTATTTTAAGACAGACTAGGGACTACTATTGTCAGTACTGTGAAAAGGTGTACAAAAGTAGCAGCAAAAGAAAGGCACACATTGTGAAAAATCATCCCGGTGCTGCTTTGCCGCCTAGTAATCGGCGCAAGGAACCTGATGTTCCGGGAGTCCCGAATCCAACGTTTAGTCAGACTGTGGGCAGCATTACCACGACTCCTCAAGGGTGTCAGTGGTGCCATAAGCAATACGCGAGCAAAGCGAAACTTTTACAACATCAACGAAAGAAACACCCAACTCTGATGGAGCCGGCGTTTCAAGTACCTAGGCCGCGAAATCGTCATTCTCAAAGCCAAAATCTTCACTCTACAATAACCGACAATAACTTCTTGATGTCCGACTACATCCAAGCTTACGATATAGACACCGACTTTCTGAAACCAAAAGTAATAAAGCTGGTAGACGGTGTTGACCTGATTGGAAACGGCATTGACAATATGGTGGGACAACAGTTTTTGCGAATGCGTGATATACGTTGA
Protein Sequence: MDPGGPPEGAPGDPLEIQGIDKAVDVVDNWQSDHNTSADQPRKMNNNRLLFLTVEYVEDNSKDYSRIFPAYEQVSFSPQASSPLSDFEHRVSPLDPNMSSAARYSPTPVQLPPSPFHNSVVVLQGPSSPLISTSDQSVRPTINYVTQLNDQSVPQVAAQSDNNSDFVVTGNEEGLDAGVSGELILMQGAAPELENSAAPLMLAGIPSADFALARDFLVTHDEQLNVMTAYKNQTLEIEETKVMKLEVKVGEDSQTAVVDREGNSIAQILSGNNNDDLLKSSDKKGVRRSKRQINDKKMLWCKECDADCVNAENCTVHNVQTIADQPVPSRARATLPGSHLTINKLPMSSTLPGGSIYGVFAKRNIPRRTQFGPIEGILCSYEGIVAENTLPLLYQTDNGEFLKIDVSDENASNWMRFVRPASTYKEQNLIISQQSEGIMFLTVRNISPKEELKAGPSPEYANVRSLSVLIPNPKDQTELNNERNPWPCFECNQRFLTSEKLQKHLNVHDGPRIDGKSRNKRKKIHTPSNKLFKIVDGQTVLYTCPHCSKVFPRSYSLKRHLLIHPGAKAPRYECQTCGENFLHPYNRSRHIKIFHSGSSNEKENNKQNTSEWKCLNCNLIFTKAALLNLHSLIHSPDNLKTEGQSTSCPQCSSQFDKQNELVHHVGEHGRQQVEKIAKQTPLAAHKCSMCYKRFATKVRLQQHCLVHGDDDQKPLPCNICLKRFMNNSALSCHLKTHREDKQIFECPMCRQLFDQVLMLKDHIETHRSEDGIFNCPHCPRSFTKYSVIRKHIRAHHCERKHKCQFCTKRFPTVDKLRMHLLRHSDHREFHCANCDKQFKRKDKLKEHMTRMHNAERESQQQLAQGLQAKKFIPKVNPTDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVPPESVPELNLPILRQTRDYYCQYCEKVYKSSSKRKAHIVKNHPGAALPPSNRRKEPDVPGVPNPTFSQTVGSITTTPQGCQWCHKQYASKAKLLQHQRKKHPTLMEPAFQVPRPRNRHSQSQNLHSTITDNNFLMSDYIQAYDIDTDFLKPKVIKLVDGVDLIGNGIDNMVGQQFLRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01049132;
90% Identity: iTF_00939003;
80% Identity: -