Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: -
Assembly: GCA_944452905.1
Location: CALYCC010000005.1:4176156-4179190[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0017 0.27 12.7 1.0 2 23 429 451 428 451 0.94

2 15 0.0063 0.96 11.0 5.6 1 23 457 480 457 480 0.93

3 15 5.3e-05 0.0081 17.5 1.9 1 23 485 508 485 508 0.95

4 15 9.5e-06 0.0015 19.8 5.6 1 23 542 565 542 565 0.96

5 15 0.056 8.6 8.0 1.8 1 23 570 592 570 592 0.97

6 15 3.5e-05 0.0053 18.1 0.9 1 23 598 620 598 620 0.98

7 15 0.00091 0.14 13.6 0.2 1 23 633 655 633 655 0.98

8 15 1.3 2e+02 3.7 0.3 2 23 669 691 668 691 0.94

9 15 0.22 34 6.1 0.4 1 23 698 723 698 723 0.94

10 15 3.3e-05 0.0051 18.1 4.6 1 23 735 758 735 758 0.96

11 15 6.6e-05 0.01 17.2 0.7 1 23 763 786 763 786 0.95

12 15 0.0017 0.27 12.7 3.3 1 23 843 866 843 866 0.94

13 15 3.2e-05 0.005 18.2 1.4 1 23 884 907 884 907 0.96

14 15 0.00027 0.042 15.2 3.3 1 23 912 934 912 934 0.98

15 15 0.041 6.3 8.4 1.8 1 23 941 963 941 963 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0017	0.27	12.7	1.0	2	23	429	451	428	451	0.94
2	15	0.0063	0.96	11.0	5.6	1	23	457	480	457	480	0.93
3	15	5.3e-05	0.0081	17.5	1.9	1	23	485	508	485	508	0.95
4	15	9.5e-06	0.0015	19.8	5.6	1	23	542	565	542	565	0.96
5	15	0.056	8.6	8.0	1.8	1	23	570	592	570	592	0.97
6	15	3.5e-05	0.0053	18.1	0.9	1	23	598	620	598	620	0.98
7	15	0.00091	0.14	13.6	0.2	1	23	633	655	633	655	0.98
8	15	1.3	2e+02	3.7	0.3	2	23	669	691	668	691	0.94
9	15	0.22	34	6.1	0.4	1	23	698	723	698	723	0.94
10	15	3.3e-05	0.0051	18.1	4.6	1	23	735	758	735	758	0.96
11	15	6.6e-05	0.01	17.2	0.7	1	23	763	786	763	786	0.95
12	15	0.0017	0.27	12.7	3.3	1	23	843	866	843	866	0.94
13	15	3.2e-05	0.005	18.2	1.4	1	23	884	907	884	907	0.96
14	15	0.00027	0.042	15.2	3.3	1	23	912	934	912	934	0.98
15	15	0.041	6.3	8.4	1.8	1	23	941	963	941	963	0.85

Sequence Information

Coding Sequence: ATGGACCCGGTCGCACAGTGCAGCTACGTTGGTTGTAATAAATCGTTGATAATAGGACGACGATTTCACAATCTTCCAGTCAAAAATGCCGGCCTCTGTGTTAAGTGGCTAATAAACAGCGGACGCGAAGATTTGCTCACATATGAATCTACGATTCTAGAATCTATGAATCTCGCTATTTGCGGCGACCACTTTCAAGATCACGATTACGACGGTCTAGGAAATTTAAAAGAAGATACAGTTCCACTGCAATATTGGGACCTTGGATACTCTTGTGAACTTGGTGAAATCAAAGATACCGATATTGATCGACAGCCGGAGAACTACAGTGACGAAAGTTTCACAAGTATCGATTCAGAAGAGGATGAAAAGGACTCAGATATAGCTACAGACGATGAGTTTCGGACACAGTTAGGCAATGAGATAGAAGCCCTGTTGAATTCTGTTCAAACTTCGCGCAGACAATCCCAGAATAAGAGGAAACAGGACTTTGGTCAAACTTTGGAAAGTTTCTACAAGAAATTGAACATCAAAGGAGAGAGGAATAGGAATAAAAATGATGATTTCAAAATGATGAATTTGGTCGAATTCAGAAGAGCTACTAAAGATATATGTAGAACTTGTGCTAAGAAGAAAAACAATCTTGTCGATATCGCTGATAAAACTACCCATTCTGATATCAATATAATAACTAAGTTGAAACTCCTGATAGAGATTAAAGATCAGGACTTACTGCCGACTAAAATTTGCCAAGATTGTTTAACAAAGTTAGAACAATCTTACGCATTTTTTCAACAAATATATAAGGCAGATAATATTCTTCACGATATGTTATTCAAATATAAAAGACCTAGCAAGACTGGTTCTGATCGAGGTAAATTCAATGGTCATGTTAGAACTAAATATAAGTCTGTTGGTGTTGGAAATGAGAAGCTTTGCTTGGATGTTAACGATCTGCCTTTTAAAAATAATTCGAAAACTACGTGGACATTGGACAATAGTATTGACAATGGTAAAATAATTGATAATTACAATTCTATTCCGTTTGATAAAGATCTTCACAAGAGTAATAACATCCAGGATAAGCACAGTGTAAATAGCGAAGTTGATTCGAGCGAAAATACCGAAAATACTGTGAGCTATTTACTCTCGGATTTTTCCAACAATGATGCTGAATTGAACTGGCTTGACGTTGTGGGAGTTATGCAAAAGGAACGCGGAGAACCAAATTTATCAAAGTCAATTATAACTAAGGGGAAATTACCTACCGGCGGTCTTAGAATTTACTGCAGATATTGCGACAGTAGTTTCAGATTGAGACGCCAATTAAAAACTCATATAACTGTAGATCATCTTCAGCCAACCAATTACATGTGCGAGTATTGCAATATCTGCTGCAAGAGTAAAGAACACTTGTCCGAACATCGTGCGCAAGCTCATTCTAGACAGAAATATAAATGCAACGATTGTGGAGAGACATTCCACAAGAAACTAGACCTACAGTCACACATTGAACAAACACATTCCGAGAAAAAAAATAAACCCCCGATAATAGATCCTTGCGTTGAAAGAGTTTTAACACCGGAAATTAGTAGTCATGGCGCTTCTCATCCCGATCAAACTTTCATCTGTAATGACTGCGATAAAAGTTTCTCATCGAAAAAGACTCTTTGCAATCATATTCACCGTTTACATCCACCTTTCGCTTACACTTGTAATATTTGCAACAAGGTGATGCACAGTGAAGCAGATACATATAAACACATGACTATGCACGACAAGTCTCCGTTATTTCCTTGCTTAGATTGCGGCAGGATGTTTTACAGCACGGATAGATTAGAAAAGCATAGAAATACGCACAGCAAAAGTTCTCTTAAAAAGCGGAAAAGAGTCTGGTTTCATTGTCAGCTGTGCGACGCATCCTATAGAATAGCTGACGAGTTGATTAATCACATAGAAACTCACTCATCTGAGGACTGGGAGAATTATAGGAACAAAATTTTGTATTGCGGGGAATGTAATGCGAGATTAATTGGCAATGAAAAATTTCGAATCCATAAAATGAGGTATCATTTGGCAAAAAGAGGTGATTTTATCTGCCTACTTTGCGACAACGTTTCTAAAGACTTTCAATCTTCAAAAGAATATGAGAAACACATCAACTTGCATTCTAACGAATTGAAACGCGCTGCTCCTCGGAGATACAAATGCGAACATTGCGATAAAGCTTTCAAGTCAAACTCCCATCGAATAAATCATATAGATTCATTCCATTCAGACGTAATGCATTCGTGCCCGATATGCAACCTAAAAGTTAAACGTAAAGGGAATTTGAAAGATCATATCGACAGAGTTCACAGTTCGAAGAAACAGCATGGTACGATTGAGGTGTATTTAGGAGATAAACGTTTCCCTTGCCGCATTTGCGGAGAAGAACTTCTTACTGGTAAGCAGAGAAGCGAGCATGAAGATGCGCATCAAGAACCCTTCAAGGATTTGGAAAAATTGTTTCCTTGGACTCAGCGATATACTTGCGATCATTGCGGCATGAAATTCTACTACATCCACAAGTTGAGGCAACATCTCATCGGAGAACACGACGACAAAGAAAAGGCTGCAATTATTGAAACGTTAGAAAAAAATCGGAAGTTTAGATGCACAGAATGTGAGGCAACCTTTAAGCACAAGAGCGGTCTGGACACGCATATGAAAGGGATTCACTCTGGCACGGAACACACTTGTTCGATTTGCGGAATGAAATGCAAACTGGCAAGCGGTTTGAAAAAACATTTACTCACACACGACGAAGACAGACCGTTATACAAATGCCAATACTGTGAGAAACAATTCAAAAACGATGAAAGGCGAAATAATCATGAAGCTAATCATCAAACAAATGATGAGAAACGTTTCAAAAGAGATCCATCCAACTATGATGGCGAATGA
Protein Sequence: MDPVAQCSYVGCNKSLIIGRRFHNLPVKNAGLCVKWLINSGREDLLTYESTILESMNLAICGDHFQDHDYDGLGNLKEDTVPLQYWDLGYSCELGEIKDTDIDRQPENYSDESFTSIDSEEDEKDSDIATDDEFRTQLGNEIEALLNSVQTSRRQSQNKRKQDFGQTLESFYKKLNIKGERNRNKNDDFKMMNLVEFRRATKDICRTCAKKKNNLVDIADKTTHSDINIITKLKLLIEIKDQDLLPTKICQDCLTKLEQSYAFFQQIYKADNILHDMLFKYKRPSKTGSDRGKFNGHVRTKYKSVGVGNEKLCLDVNDLPFKNNSKTTWTLDNSIDNGKIIDNYNSIPFDKDLHKSNNIQDKHSVNSEVDSSENTENTVSYLLSDFSNNDAELNWLDVVGVMQKERGEPNLSKSIITKGKLPTGGLRIYCRYCDSSFRLRRQLKTHITVDHLQPTNYMCEYCNICCKSKEHLSEHRAQAHSRQKYKCNDCGETFHKKLDLQSHIEQTHSEKKNKPPIIDPCVERVLTPEISSHGASHPDQTFICNDCDKSFSSKKTLCNHIHRLHPPFAYTCNICNKVMHSEADTYKHMTMHDKSPLFPCLDCGRMFYSTDRLEKHRNTHSKSSLKKRKRVWFHCQLCDASYRIADELINHIETHSSEDWENYRNKILYCGECNARLIGNEKFRIHKMRYHLAKRGDFICLLCDNVSKDFQSSKEYEKHINLHSNELKRAAPRRYKCEHCDKAFKSNSHRINHIDSFHSDVMHSCPICNLKVKRKGNLKDHIDRVHSSKKQHGTIEVYLGDKRFPCRICGEELLTGKQRSEHEDAHQEPFKDLEKLFPWTQRYTCDHCGMKFYYIHKLRQHLIGEHDDKEKAAIIETLEKNRKFRCTECEATFKHKSGLDTHMKGIHSGTEHTCSICGMKCKLASGLKKHLLTHDEDRPLYKCQYCEKQFKNDERRNNHEANHQTNDEKRFKRDPSNYDGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00939836;
90% Identity: iTF_01412601; iTF_01411806; iTF_01414464; iTF_01413657;
80% Identity: -