Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: L
Assembly: GCA_944452905.1
Location: CALYCC010000126.1:1217250-1228452[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 7.4e-06 0.0011 20.2 1.4 1 23 71 93 71 93 0.98

2 19 0.38 58 5.4 4.1 1 23 99 121 99 121 0.98

3 19 1.1e-06 0.00017 22.8 4.3 1 23 127 149 127 149 0.99

4 19 0.00023 0.036 15.5 0.2 1 23 155 177 155 177 0.99

5 19 0.00024 0.037 15.4 0.6 1 23 338 361 338 361 0.96

6 19 0.39 60 5.3 0.0 2 23 371 393 370 393 0.88

7 19 0.22 33 6.1 0.1 3 23 481 501 480 501 0.97

8 19 0.019 2.8 9.5 0.1 3 23 515 535 514 535 0.96

9 19 0.00011 0.017 16.5 0.6 1 23 544 567 544 567 0.94

10 19 3.9 6e+02 2.2 0.2 1 23 572 595 572 595 0.91

11 19 1.2 1.8e+02 3.8 1.1 2 23 672 693 671 693 0.94

12 19 0.00032 0.05 15.0 0.5 1 23 698 720 698 721 0.96

13 19 0.00047 0.073 14.5 0.9 2 23 824 846 823 846 0.96

14 19 0.0038 0.59 11.6 1.4 1 23 855 878 855 878 0.94

15 19 0.0028 0.43 12.1 0.2 2 23 1065 1087 1064 1087 0.93

16 19 0.0053 0.82 11.2 0.3 1 23 1098 1121 1098 1121 0.96

17 19 0.19 30 6.3 0.3 2 23 1133 1154 1132 1154 0.95

18 19 0.0052 0.8 11.2 0.1 2 23 1163 1185 1162 1185 0.94

19 19 0.069 11 7.7 1.5 1 23 1192 1215 1192 1215 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	7.4e-06	0.0011	20.2	1.4	1	23	71	93	71	93	0.98
2	19	0.38	58	5.4	4.1	1	23	99	121	99	121	0.98
3	19	1.1e-06	0.00017	22.8	4.3	1	23	127	149	127	149	0.99
4	19	0.00023	0.036	15.5	0.2	1	23	155	177	155	177	0.99
5	19	0.00024	0.037	15.4	0.6	1	23	338	361	338	361	0.96
6	19	0.39	60	5.3	0.0	2	23	371	393	370	393	0.88
7	19	0.22	33	6.1	0.1	3	23	481	501	480	501	0.97
8	19	0.019	2.8	9.5	0.1	3	23	515	535	514	535	0.96
9	19	0.00011	0.017	16.5	0.6	1	23	544	567	544	567	0.94
10	19	3.9	6e+02	2.2	0.2	1	23	572	595	572	595	0.91
11	19	1.2	1.8e+02	3.8	1.1	2	23	672	693	671	693	0.94
12	19	0.00032	0.05	15.0	0.5	1	23	698	720	698	721	0.96
13	19	0.00047	0.073	14.5	0.9	2	23	824	846	823	846	0.96
14	19	0.0038	0.59	11.6	1.4	1	23	855	878	855	878	0.94
15	19	0.0028	0.43	12.1	0.2	2	23	1065	1087	1064	1087	0.93
16	19	0.0053	0.82	11.2	0.3	1	23	1098	1121	1098	1121	0.96
17	19	0.19	30	6.3	0.3	2	23	1133	1154	1132	1154	0.95
18	19	0.0052	0.8	11.2	0.1	2	23	1163	1185	1162	1185	0.94
19	19	0.069	11	7.7	1.5	1	23	1192	1215	1192	1215	0.95

Sequence Information

Coding Sequence: ATGGCTGGGCTGATAAAAGTCTCGATTAAAAATGAAGCATTGGGTACCGGAAGTTCGTCATGGCACAGCGAAGACGGTGGTCCAGCGTCGAGAAGGGGTGGCGACACGCCATCTTCTTGCGCTACTCCAACATCGGCAAGTTTTCCCTCAGAACCGGAAGCGGAAGGTGAAAATGGCTCGCATGCGGACCTCAACAACCCCGCGGCTCCTTATCCCTGCCAATTTTGCGACAGATCGTTTCCCAGATTGAGCTACTTGAAGAAACACGAACAGAGCCACGGTGATCAGATGCCCTACAAATGTAGCTGGTGCGCAAGATTGTTTAAACATAAACGGAGCAGAGATAGACACGTGAAATTACACACCGGCGACCGGAGATATCGATGCACGCACTGCGAGGCCGCCTTCTCAAGAAGCGACCACTTGAAGATTCACATGAAAACTCACGACACCCAAAAACCGTATCAATGCACCGCGTGTTCCCGGGGCTACAACACCGCGGCTGCTCTCACCTCCCACATGCAATCCCACAAAAAACATCACGGGATAACTCAGAGCTCAAAAATCGAGTCGGACTTTGGACGTCGGAGTGTTTCCTCGCACAGCACGGCATCACCGCCGGTGCCGAACTCGCCTTCGCCGAGTTTGAACCTGACGCTGGCATCGAGAAACCAGAGTAAAGGTTCGCCGATGGGTCCTAGTGCCTCGAACACGCCGATTCTTCACTCTCCCTTGAAATTAACCTGCATGTATTGCACTCGGGACTCTTTCACCAGTATGCAACAGCTCCAAATGCACGTCCACGCGATGCATCGGTCGATATTGAGCGGCGAGAATCTCACCATGCCATCGCCAGGGAGAATTTCCGAAGTCTCGAGCCTCTCGAGAGACAAGATATTCGATGTGCAGGATAAAACGTTCAAAGAAAACGACAAGAAACACTCCGAAGACCGGGAGAAGAGTATGGAAGGTGCTAATCTTTGCGTGAAGAAGGAATTCTTCGAGAATAGCTTCTCCTGCGGACAGTGCACGATGAAATTCTCCAACCTCAGCACGTTGAGGGATCATTTAATATCGATACACCGCGTCGACGGCTTCGGTGCTACCCTGATGTGTCCGCTGTGCGGTATACCCTGCGTCTCTGCGGCTGCCTACGCGGAACATTACGTTCTACAACACTGCGACGATCGCAGGATAAATTACACGGAAAATTCTGATTACAATGAGCTGAAGTCCGCTTCGAGAAGCAGCCATAAAAACGAGGCGCTGGCTTACGGAACAAAGTCGTCAAGGGATCTGGAGAGGCCGGTGAAAACCAGCAGGGAACTTGCCGAATCTAAAATTATTTCAAACGGCAGCTACGAGCAAAAGGAACAACCCGCCGACCTGACGAACAAACATGGAAGATCGTCTGAGGCATATTCAGCCGGCACCCTTCTCTGTGGACAGTGTGGCGCAGCTCTCAAAGACTTCGAGTCATTCCGCGAGCATTTGGCGAGACATTTGCAGGCCGATCATCGTAAAGAAGTGGTTAAAAATCCGTGCCCGAAATGCGACGCGTCTTTTCAAGACCGTGAGGAGATGCTGGGCCATTTAACGAAACACTTTCTAGGCCAGGTGACCAAGGAGTACGTCTGTGGTGTTTGCAAGAAGTTTTACCCCCATCCGGACCTCCTTCAAAGACACTTGCTCGATTCGCACGCCCATCATCTTTACAGATGCGCTCTTTGCCGGGATACTTTCGACTCTAGAGTCGCCATTCAGGTACATTTCGCCGTGAAACATAGCCAGGAATGCAGGATTTATCGATGCAACGTTTGCCCCAGTACCAACAACGAGAATTCGCCTGGAAATTCGCCGGGAGGTGCGAACAGGAACCTGTTTCGCAGCGAGGCGGAAATGGCCAGTCATGTCAGGGCCGTTCACGCGCCTCCTGCAACTGTCGTAGACAGCCCTGCAATGATGCCGAGAAGTCCAGCTGCGACACCTGCGAGCACGTTGAACGCTAATTTGCGGTGTGTTTTTTGCGGCGTTTGTTGCGCCTCCGATCTCGAGCTACAGTTGCACCTCGCCAATCATTCGGCGAGTTTATACCGGTGCCCGATATGCCGCGAAGGTTTTGCGGTCGAGTTTCTACTCGATAAGCACATGCAGTCTCATCATCTGGCCAGTTTGCCAAGCGGGCAAAATCAGCAGCGCGAAAACGGGCGGGGAATTAATACCAGGATTCAGACGGGCGACGATAGCGCGAGGGTCCAGAAACGGGGAAGGTCCCCTGCCAGTAGTAATAACAACTCGGTTAGTCAGCGAGATAACAATAACAAGAGGGCCAATTATGGGAGCGGGGTTCAGCATTGCGAACTTTGCGAAAGAGGCGAGTTTGCGAACGACGCTGAACTACAGGCTCATAAAAAGCTCGTTCATACGCCGCCCAAGACTCAAAATAAGTCGCTGGCTACTCTAAGTTTAACTTGTGCCTATTGTGGTGAGATTTGCCGGTCTAGAACGGAGCTCGAATCGCATACTAGGATACAACACGCTTCGAACGAGCCGGGAGGTCGACACAAGTGTAACATATGCGACGAGGTCTGTCCCTCTGGCTCGAATCTAGCTGAACATAAGCTACAGAAACACTGCAAGATACTTCTCAGTGACACGTGCGTTGTCTGTCGCGGTATACTCAACTCTGAGAACCAATTTCTTGAGCACGTGCAACGGCACAGCCTTGAGAATCTCGACCCCCAGCAGAGGGTCGATAACTCGTTACCTCATCTTCCGTCACCTTGCGTTATCTGCCGTCAGACGCTGATCAGTGACCTAGAATGCCGACTGCACGCGAGGTATCACCTGAGAGCGACTAGTTCCCAAAATTCGAGTCCAAATCTGAGCCGTAAGTCACCGAATCCAAGCTGTTGTCTTTGCCTGCGAGAATTTCCCGTCGAAGACTTTGTGAGTCTGCCTTCGAATCCAGGCAGTGGTGGAAGCCAGTCGTTACAAGTGTGCAAGTCCTGTTACATCCGACACACTCAAGGTTTACCGATTCTCCACTCACCCTACGAGCACGTTCGCCATGGAGCTAAAGAAGACCGTGTTTGGGACCAGTCCAAGGATAAATGGGAGTCGAAATCTCGCGGTAAGGACTTCTCAACGGTCCAGGAAGCCAAGGCTACTGCTACGGAAGATGAAATTCAAAGATGCGAAGACTGCGGTGTCAAGTTTGAACACATAGAAGAATTGGAGGCTCACAGAGCCCAGGAACACACTCAACGCGAAGAGGTTCAACCCAAAACTTACACCTGCATTCAATGCCAGATATCGTTCGCAACGGAGTCTGAAATCCAGAAACACGTGAGAAAGGAACACCTCGAATCGGCAGGAAAGTCTTGCGATGCTTTAAGGTGTCACCTGTGCTTGATGGACACTTCGAGTCCTCTTCAGCTTCAAGCTCATCTTATAGAGCACTCTTTTGCCGGATGTGCAGCTTTGAGCTGCTACATTTGCCAAGCATTATTCACGACGCCTGTTGGATTGCAGAATCACATGCTGCAGCAACACGGTCTGGGAGCTCGACCTTACGACTGCAACTTGTGCAATCTCAAGTTCTTCTTCCGTGCAGAGCTGGACCATCACGTGGTTACGTCGCATCGTGGAAGGGACTCGATATCGCCTCGTGAAAATCACCTGCCTTCAACGACCGCAGTGGCGATAAAGAGTTTTGAGAACGACGACGACAACAAGGACAACGATGCGAGGACTCTACACGAAGTGAGAGTAAAGGACGAGATGATAACCGGCGAGGAGGAAGATATCAACGTCGACGAACAGGAGGACGAGGCCCAGGATCGAGGCCAAGCAGAAGTTGAAAATTTGGACCTAGAAAGAGACGAAGAACTGAAAGTGGCGAGTATTGAGGGAAAAAAAGAAGGCGATGGAGCGGTGGAAAAAAGCGAATCGTGA
Protein Sequence: MAGLIKVSIKNEALGTGSSSWHSEDGGPASRRGGDTPSSCATPTSASFPSEPEAEGENGSHADLNNPAAPYPCQFCDRSFPRLSYLKKHEQSHGDQMPYKCSWCARLFKHKRSRDRHVKLHTGDRRYRCTHCEAAFSRSDHLKIHMKTHDTQKPYQCTACSRGYNTAAALTSHMQSHKKHHGITQSSKIESDFGRRSVSSHSTASPPVPNSPSPSLNLTLASRNQSKGSPMGPSASNTPILHSPLKLTCMYCTRDSFTSMQQLQMHVHAMHRSILSGENLTMPSPGRISEVSSLSRDKIFDVQDKTFKENDKKHSEDREKSMEGANLCVKKEFFENSFSCGQCTMKFSNLSTLRDHLISIHRVDGFGATLMCPLCGIPCVSAAAYAEHYVLQHCDDRRINYTENSDYNELKSASRSSHKNEALAYGTKSSRDLERPVKTSRELAESKIISNGSYEQKEQPADLTNKHGRSSEAYSAGTLLCGQCGAALKDFESFREHLARHLQADHRKEVVKNPCPKCDASFQDREEMLGHLTKHFLGQVTKEYVCGVCKKFYPHPDLLQRHLLDSHAHHLYRCALCRDTFDSRVAIQVHFAVKHSQECRIYRCNVCPSTNNENSPGNSPGGANRNLFRSEAEMASHVRAVHAPPATVVDSPAMMPRSPAATPASTLNANLRCVFCGVCCASDLELQLHLANHSASLYRCPICREGFAVEFLLDKHMQSHHLASLPSGQNQQRENGRGINTRIQTGDDSARVQKRGRSPASSNNNSVSQRDNNNKRANYGSGVQHCELCERGEFANDAELQAHKKLVHTPPKTQNKSLATLSLTCAYCGEICRSRTELESHTRIQHASNEPGGRHKCNICDEVCPSGSNLAEHKLQKHCKILLSDTCVVCRGILNSENQFLEHVQRHSLENLDPQQRVDNSLPHLPSPCVICRQTLISDLECRLHARYHLRATSSQNSSPNLSRKSPNPSCCLCLREFPVEDFVSLPSNPGSGGSQSLQVCKSCYIRHTQGLPILHSPYEHVRHGAKEDRVWDQSKDKWESKSRGKDFSTVQEAKATATEDEIQRCEDCGVKFEHIEELEAHRAQEHTQREEVQPKTYTCIQCQISFATESEIQKHVRKEHLESAGKSCDALRCHLCLMDTSSPLQLQAHLIEHSFAGCAALSCYICQALFTTPVGLQNHMLQQHGLGARPYDCNLCNLKFFFRAELDHHVVTSHRGRDSISPRENHLPSTTAVAIKSFENDDDNKDNDARTLHEVRVKDEMITGEEEDINVDEQEDEAQDRGQAEVENLDLERDEELKVASIEGKKEGDGAVEKSES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01200406;
90% Identity: iTF_01413641;
80% Identity: -