Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: -
Assembly: GCA_944452905.1
Location: CALYCC010000019.1:111714-119937[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.1 15 7.2 4.5 1 23 405 427 405 427 0.98

2 19 0.058 9 7.9 1.1 1 23 433 456 433 456 0.95

3 19 0.0026 0.41 12.2 0.7 1 19 462 480 462 484 0.91

4 19 0.0026 0.4 12.2 3.2 1 23 490 512 490 512 0.98

5 19 0.018 2.8 9.5 0.1 3 23 520 541 518 541 0.94

6 19 0.33 50 5.6 2.8 1 23 548 571 548 571 0.97

7 19 0.00016 0.024 16.0 1.9 1 23 575 597 575 597 0.96

8 19 0.0068 1 10.9 0.9 1 23 603 625 603 625 0.98

9 19 8.3e-05 0.013 16.9 2.2 1 23 631 653 631 653 0.96

10 19 0.00032 0.049 15.0 0.1 1 17 658 674 658 675 0.93

11 19 0.12 19 6.9 0.6 2 15 1163 1176 1162 1181 0.80

12 19 3.1e-05 0.0047 18.2 0.1 1 23 1219 1241 1219 1241 0.98

13 19 0.11 18 7.0 1.8 1 23 1247 1269 1247 1269 0.98

14 19 0.00053 0.081 14.3 1.2 2 23 1276 1297 1275 1297 0.96

15 19 0.083 13 7.4 1.2 2 23 1304 1326 1303 1326 0.95

16 19 0.00017 0.026 15.9 0.1 1 23 1330 1352 1330 1352 0.98

17 19 0.0096 1.5 10.4 3.3 1 23 1357 1379 1357 1379 0.98

18 19 3.1e-06 0.00047 21.4 0.8 1 23 1385 1407 1385 1407 0.98

19 19 6.7e-05 0.01 17.2 0.3 1 22 1412 1433 1412 1433 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.1	15	7.2	4.5	1	23	405	427	405	427	0.98
2	19	0.058	9	7.9	1.1	1	23	433	456	433	456	0.95
3	19	0.0026	0.41	12.2	0.7	1	19	462	480	462	484	0.91
4	19	0.0026	0.4	12.2	3.2	1	23	490	512	490	512	0.98
5	19	0.018	2.8	9.5	0.1	3	23	520	541	518	541	0.94
6	19	0.33	50	5.6	2.8	1	23	548	571	548	571	0.97
7	19	0.00016	0.024	16.0	1.9	1	23	575	597	575	597	0.96
8	19	0.0068	1	10.9	0.9	1	23	603	625	603	625	0.98
9	19	8.3e-05	0.013	16.9	2.2	1	23	631	653	631	653	0.96
10	19	0.00032	0.049	15.0	0.1	1	17	658	674	658	675	0.93
11	19	0.12	19	6.9	0.6	2	15	1163	1176	1162	1181	0.80
12	19	3.1e-05	0.0047	18.2	0.1	1	23	1219	1241	1219	1241	0.98
13	19	0.11	18	7.0	1.8	1	23	1247	1269	1247	1269	0.98
14	19	0.00053	0.081	14.3	1.2	2	23	1276	1297	1275	1297	0.96
15	19	0.083	13	7.4	1.2	2	23	1304	1326	1303	1326	0.95
16	19	0.00017	0.026	15.9	0.1	1	23	1330	1352	1330	1352	0.98
17	19	0.0096	1.5	10.4	3.3	1	23	1357	1379	1357	1379	0.98
18	19	3.1e-06	0.00047	21.4	0.8	1	23	1385	1407	1385	1407	0.98
19	19	6.7e-05	0.01	17.2	0.3	1	22	1412	1433	1412	1433	0.96

Sequence Information

Coding Sequence: ATGGCGTTGGAAGAGGAAGCCCAGATTTGCAGGCTCTGCGGCCAGTGCGAGAGCATTTACATAGACGTTTTCGGAGAGGAAGGAACGAAGAGATACCTGGGCTTGAAGATTCATACTAAAATCAACATCTTGATAGATGAGAGGGACCCGCTGCCCAAGGCGATCTGCGTACAGTGCCTGGGCAAGCTGGAATTCGTTTGCGATTTTCAGGAGGAATGCCATCGCACCCAACAACTGTTGCGCGATCGTTTCAATTGGCCATCTCCCGGTGACGTTGACGAAATCAAAATTGGAGATACTCCAGTTTCGTCAATGAACAACAATAGTATCAACAAAAATCAAAATCCCTCGCCCAATGTGGATGGCAAAGAAAATGCCGATGACAGCTCAAAAGACGAACAACAAAGCCGAACGGTATCTTCAAACGGTCCGCTTCCAGCTATCATAGATGCTAGGAGGGTTGCCATTGACAGAGATTCGATCGTAACTACGGTCAGAAATATCCGAGCCGAGGAGTCTGACTTCGATACAAAAGCTGTTCCAGAGGAAACATCAACATCAACGACAGCAGCAAGCCCGTGTAATAATTCATCGCAAACTATTCACTTGTTGAATAACAAAACTAGTACAAAAGATGTTCTGCCCGAGTTTGATATAAATAATGTTTGTCGTAACGCACCGATCGCCAACAGGTTACGAAGCCATGGAAATGGAGAAAATAACGGTTCAATAACCAGCCAATCTTCGGAGAAACCGAATCCACCCGAGGATACTAGCAATATGATACAGATACCCACCTCTACCTTGAATAAGGTTCTGACAACCGTTGCTAATTCGGAAAACATGCAGGTCACCGTCAAGGAATCTATAGCAACGAATGGCCACAATGAGGACATTAATTTCATTGTTGAACTCCGTCATAAACAAAAGACAGACTTTGTCACCGTATTGGCAAAGGTATTTCCAGATCAGGGATCGTGTATGGTAGATCGTGTGGCCATAGTGAAACTCCTTGAGAATCAGAACGGATCCGAGATACGGGCTATTGTTGATAAAGTCTTCAACAGGCCGGACTTCAAGGGGGATGATGCTGTTGATAGCGAAGCACGGCTGCCTGCGGGTCGCAATCCTGAGGACCTCTTCCGATTGGATGGGGAAGAGATCAGTGTTGACGAAAATATTGAACACGTAATTGTCGAGAAGCGGTCTCGCTACGTTTGCCGACTTTGCCGCAAAAAGTACAGTCGTAAAGACAAGTGTATTGTACATGTGAAAACTCATCTCGGTATAAAACAGTATCTCTGCACCGTATGTCCTGCTAAATTCGTCTGCAAGTCGGACGTCTTGAAACACATCAGGTCTACCCATACAAATCCCAGGCCATTTCAGTGTCCAAAGTGCCCGAGAAGATTACGCTCAAAGTTCGACCTTACAGAACACGACAATGTCCACGAAGGTATAAAACCCTACTCTTGTGACGAGTGTGGCCTGCGATATCACCACAAAGTTTCATTGCAAATGCACGCCAAGTCCCATCTTCCATCGCAAAATCTAGCATGCGAGTACTGTGGCAACGTTTTTCCATTCCGCACTAGATTACTCAGTCACATAGCCAGCGTTCACATGAAAAATAGGCGCAACTTCCGATGCCATTTCTGTTACAATTTGTACTCTAGCCTATCGGTGCTGAACGATCACATAAAGTCTAGCCACGCAGCGACTCACGTTTGCGAAGTATGCGGCAAAGAGTTCAAAGTCAAATCCAAATACAAGACCCACGTACTTCAGCATAAGAATCCGAGGCCGTTCAGCTGTCCGATATGCAACAACAAGTATGCTTCGAGAACTTTCTTGAGTGAGCATCTATCGAAACACCAAGGACTTCGTAAACACATCTGCCAGAAGTGCGGAGCCACATTTGCCCAAGCAAGCCACTTGGCTGCCCACCGACATGTTCACGGTGAGAAAAAATACCCCTGTCCCGATTGTGGGCGAAGGTTCAACAGGCAGGATAACATGAAGATCCAGGAGGATGATGGACTATCCAGGAAAGTATGCATGCGATGTATAGGGACCCTAGAATTCGTCAGTGATTTTCACAACAAATGCCACCAGACTCAACGACAACTTTTACTAGACAAAGAACGTTTGCAAACACTGCCCAAGCAAGAAATCAAAACCGATTTTGAATCCGACAAGGAGAACATCTCTCCTCACACGAATACAGAAAGGACAGAAGACTCAGTCTCCTTGCTTGCTCAACTGAAAAGGAAGAGCAGTCGCATGGAGAGCAAATTAGGAAAACTTAAAAAAATCACGTATAAGGATGTTGTTTTTGGCGATAATTTAATCTCTGGGTTGGATAACGTTGAAAATTTGGAACCGAATAGGATAGCAGTCTACTCAGAAGCCGAACACTGGACCGAAATGAAACGTAGCGCAATTGAATTAAAGGGCAATATAATCATGGAACGCAATACCGCAGTGTCGCGGACACGGAACCCTCTGGCAACGGAAATGAACAAGGAAAGTGGCAACAGAGATGGTCAGAAAAAGGTCCCACTGACTCGTCATGGAAGGAGAAAGAACGGCAGAAGAGGTAGCAGCGCCAGCATCACCAATAGGAATATCAGAAAAATTGAAAAGAGAGTTCCTGCCTCAGAGTCTGGAAAGAAGACTCTGGTCGAAAGTTGTACTACCGAATCAGGTGCAAGTGAAAAGGTAGAAGCTTCTATCGGTTCTTCAAAAGAAGAACAGAACAATGGTCAGGGTCTAAGCACGCGATTTCTCAGCATAACTGAAGAGGAACTCAATGGATCTAAACGAGTACTGCCAGAAATGGTGAAGATAGAAGCCTTGGATAGTGTCGTGATATTGTCACCGGATGGACCGGGACAAGAAGCAACTTCAGGATCAACAGCAAAGAGTCCTCGACCAGGTGATGAGGCTGGAGAGACACAGGCCCGGGGATGCGATGTGATTGCGGGACAAATGAAGGACAATACTTCAAAAATTTCTTGTACTGAAGATGACTATATGGGAGCAAAGAGCTCGCCAAAGGTGTTGATGATCAGAAAGTCGGTGATTGAATCGGTAAAAAATGGTACAACAATCAGAATTGATACTGAACATGGTTTGATAAGTAAAAATACGACTGACGCGCAGTTAACTTTGTTGGATGACGATGTGACTCCCCAGATAAATGGACTGAAACTCACTGAGGTGCCCGAAAGTTTCGGGAGATCGACAAATCTGCAGCAAGAATCGACGGGTGTGATTTCTAAGGAATTAAACAGAGATAAAGCAAGAAGTGTTGGAAATTTTCGCGAAAGGCGCAAGAAGTCTGAAGGACAATTTGGGAGACTTTCCGAACTGATAACCAACGAACAAAAAGAGATTATAGAAACCATGTACACGGTGAACATGGGGGTTGTCGACGACGCAGAAGTCTATAGGAATATCAAGATTTTGGACAAGGTCAAAGTCAAGTGTGAAATATGCGGAAAGACTTATCCAAGAATGGATAAATGCCAGGTGCATGTCTGGGGCCACCTCAACATGAAGCCGTACTGTTGCAAGTCGTGTGATTTCGTCACACTTACAGTTAGCAACATTCGATGTCATATAAGAAAACGCCACTTGAAAATCAAGCCGTTCCAATGCAATCTCTGCGACAAGACTTACGGCACTGCTGTGCTCTTGGAGGAGCACATTAATTCCCACACAGGTGCAAAACCTTACACATGCAAACTATGCGATTTTGCCACTTCAAACAGACAGGTGCTGAGCTACCACAAGACTACCCATAAACCAGTGAAAGATATATCGTGCGAGGTCTGTGGCAAGAAGTTTTACTCCAATTGCCGAATGCGAGCGCATATGATTGTGCATAATAAAGATAGGAGTCTAATGTGCAAGCTCTGTTCCACGTACTTGTGCAATGCTGAGGCTCTAGAGAAGCATTACCAGAAGGTCCATTCGCGCGATTACGTATGCGATATTTGCGGGATACGGACGAGGTCGAGGAAGGCTCTGACCAACCACGAAAATGTACATTCAGAAGCCAAATACAGGTGTCTCCTCTGCTCGAATGTCTACAAAAGCAAGCACATGCTGAAGGAACACCTCCTCAAGCACCAGGGCGTCAGAAAATACAAATGCGAATTGTGCCAGAAGTCGTTTGCTCAGCAGTCTCACATCGCCGCCCACATGAGCGTGCACATGGGCAAAAGGTACCCGTGTCCTGGCTGCAATAAGCTATTCAACAGACGAGACAACATGAGGATACACACGAGACGTTGCAAGATGTTCAAATCTGATCCGGATGCAAAGAATTTGTGGATCAGCCTCGACTCGACTCGTCCTCTCGAAACGAATAATCAAGCGATTGCGGTACGGGAAGAACCAGCTGTACCAAACGAGATTCCAAAGACTGATTCAGAAAAACTAGAGACTGCAGGCTTAGGATTAATAAGGATAAATTTACTCGCTGGTAAGACTGATTATTCTAATTCACACATGAGCGCGGCTCAGCGAGACTCGCGGGACTCGAGGGCCGTTATCCGCGACGAAGGTATTGATAGATTCAAATCTAAAGATGGTGAAATTCTTCGCATCGGTGAGGTGGAAATTTTCCCACTGTCTAAAGCAAATGTAGTCACCGTGCAAAATGAGGTTAACACGGTTATTACCGAGAATGTACTCAGGCCCGAGTGCTTTTAG
Protein Sequence: MALEEEAQICRLCGQCESIYIDVFGEEGTKRYLGLKIHTKINILIDERDPLPKAICVQCLGKLEFVCDFQEECHRTQQLLRDRFNWPSPGDVDEIKIGDTPVSSMNNNSINKNQNPSPNVDGKENADDSSKDEQQSRTVSSNGPLPAIIDARRVAIDRDSIVTTVRNIRAEESDFDTKAVPEETSTSTTAASPCNNSSQTIHLLNNKTSTKDVLPEFDINNVCRNAPIANRLRSHGNGENNGSITSQSSEKPNPPEDTSNMIQIPTSTLNKVLTTVANSENMQVTVKESIATNGHNEDINFIVELRHKQKTDFVTVLAKVFPDQGSCMVDRVAIVKLLENQNGSEIRAIVDKVFNRPDFKGDDAVDSEARLPAGRNPEDLFRLDGEEISVDENIEHVIVEKRSRYVCRLCRKKYSRKDKCIVHVKTHLGIKQYLCTVCPAKFVCKSDVLKHIRSTHTNPRPFQCPKCPRRLRSKFDLTEHDNVHEGIKPYSCDECGLRYHHKVSLQMHAKSHLPSQNLACEYCGNVFPFRTRLLSHIASVHMKNRRNFRCHFCYNLYSSLSVLNDHIKSSHAATHVCEVCGKEFKVKSKYKTHVLQHKNPRPFSCPICNNKYASRTFLSEHLSKHQGLRKHICQKCGATFAQASHLAAHRHVHGEKKYPCPDCGRRFNRQDNMKIQEDDGLSRKVCMRCIGTLEFVSDFHNKCHQTQRQLLLDKERLQTLPKQEIKTDFESDKENISPHTNTERTEDSVSLLAQLKRKSSRMESKLGKLKKITYKDVVFGDNLISGLDNVENLEPNRIAVYSEAEHWTEMKRSAIELKGNIIMERNTAVSRTRNPLATEMNKESGNRDGQKKVPLTRHGRRKNGRRGSSASITNRNIRKIEKRVPASESGKKTLVESCTTESGASEKVEASIGSSKEEQNNGQGLSTRFLSITEEELNGSKRVLPEMVKIEALDSVVILSPDGPGQEATSGSTAKSPRPGDEAGETQARGCDVIAGQMKDNTSKISCTEDDYMGAKSSPKVLMIRKSVIESVKNGTTIRIDTEHGLISKNTTDAQLTLLDDDVTPQINGLKLTEVPESFGRSTNLQQESTGVISKELNRDKARSVGNFRERRKKSEGQFGRLSELITNEQKEIIETMYTVNMGVVDDAEVYRNIKILDKVKVKCEICGKTYPRMDKCQVHVWGHLNMKPYCCKSCDFVTLTVSNIRCHIRKRHLKIKPFQCNLCDKTYGTAVLLEEHINSHTGAKPYTCKLCDFATSNRQVLSYHKTTHKPVKDISCEVCGKKFYSNCRMRAHMIVHNKDRSLMCKLCSTYLCNAEALEKHYQKVHSRDYVCDICGIRTRSRKALTNHENVHSEAKYRCLLCSNVYKSKHMLKEHLLKHQGVRKYKCELCQKSFAQQSHIAAHMSVHMGKRYPCPGCNKLFNRRDNMRIHTRRCKMFKSDPDAKNLWISLDSTRPLETNNQAIAVREEPAVPNEIPKTDSEKLETAGLGLIRINLLAGKTDYSNSHMSAAQRDSRDSRAVIRDEGIDRFKSKDGEILRIGEVEIFPLSKANVVTVQNEVNTVITENVLRPECF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01414419;
90% Identity: -
80% Identity: -