Rchl010466.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- -
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000048.1:296471-299341[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.019 2.9 9.5 0.0 1 23 295 317 295 317 0.96 2 12 4.4 6.8e+02 2.0 0.2 2 21 318 338 317 339 0.86 3 12 1.1e-06 0.00017 22.8 1.5 3 23 382 402 381 402 0.98 4 12 2.7e-05 0.0041 18.4 0.2 1 23 408 430 408 430 0.98 5 12 0.00017 0.026 15.9 2.6 1 23 436 458 436 458 0.99 6 12 6.7e-06 0.001 20.3 1.3 1 23 464 486 464 486 0.98 7 12 0.00021 0.032 15.6 1.4 1 23 492 514 492 514 0.98 8 12 5.8e-06 0.0009 20.5 0.6 1 23 522 544 522 544 0.98 9 12 0.00038 0.059 14.8 0.3 1 23 550 572 550 572 0.96 10 12 2.6e-05 0.004 18.5 1.1 1 23 578 600 578 600 0.98 11 12 2e-05 0.003 18.8 0.6 1 23 606 628 606 628 0.98 12 12 0.0086 1.3 10.5 5.1 1 23 634 656 634 657 0.95
Sequence Information
- Coding Sequence
- atggccgtggtcgaagaattcagcgaactttgccggctctgcgcggccaagacgagtctgctattgggcctgccgatattcgagaccgagggcgagctgaggcacatagacgagaagatcgccgcgtgtcttcccgtccagGTATCTCCGACGGACAAGCTCCCGAAAATGGTATGCGAAGAGTGCGCCTACAAGCTCGACCAGCTTTACGATTTTCGAGAAAAGTGCCTGAGGACCGAGGGCATGTTTCTCGCCATGCTAAAGGGGGTCGAAGTCGAGGATGGTCAGTTCAAAGAGGAATGCGAGAACTCGGAACAAATCCAGGCTATGAGAGTCATGGATGATATGGACCTAGCCGGAGGTGAACAGGTCGTTACTCAAGAAGAAATTTGCCAGCAGGGAGGCGAGATCCAAGTCGCTGGCATCGAACTTGATGGAGATACTGTCAGGATGGTAGATCAACACATGCGGGAGATGCAGGATGAGGTCTCTAGTCAGCAGATAACAATGCATCTCGAGGGAGACGTTACCGTTGTTAGCGACCTCACTGTCGGGGGAGAACTCAGTCAGCTGGACATAAACTACGTGACTTCTATCAGTCCGGAGAATCAAGACTGCCAAATAGAAAGGGAGAGGGAGAACGGCGTTCACCACGTGGACAGCGACAGCGAAAGCGAAGTAGAGGAGTCTGGGGTTAGCGAGGAGGACACAGCGCGGACCGACGAACCTCTGCGGTCTGTAGCAGTTGCATCTACAAGCGGGAGAAGCGGCGTTAACAGCGTGAGCAACGAGACTACTGTGGAGTATACAAAAGAGGCTAAAGCGTCGCTGCTTGAAGCAACCCTATCTAATCCTAGTATAGATGAGGCAGGGAACAGCTGGTACGTTTGCCGTCTTTGCAACGAAGCTTCGACGGAGCCGTCCAGTCTCGCGGATCATTTCGAAGTACATTTCTGCAGCTGTGCCTGTGGTATTTACTACACAAGTGTAGAGGCGCTTAATATCCACAAGCAACACTGTCCGACCGGTAAAAACAAGGATGTGGATTCGGCGATCGAAGACTGCGTGGGAAGCCTCCTGGTCAGGACTGAGGATAACAGAAAGCCTGGTACAACTGCCAGGCAGAAATGGacccctaaaatatgcactgagtgtggcaaacagtataggactaactacaagctgcaggaacacatgcggaaacacacgggggagaaacctttccaatgtctgctctgcgacaaggcgttcaggagcaaaataggacttgctcaacacaccgcgactcacacgggacagtttgactacacctgttcgacgtgcggtaaagggtttcagtgcaagagctatcttatagttcaccagagagtacactctgacctgaaaccctacccttgcagtacctgcggtcagaattttaagaccaaacagtccctgcttgatcaccagaacagacatcttggggttaagccgtacatgtgtgaggtttgcggtaaaggattcatcacaaagggattgtgcaaaagccatcagaagatacattctggcaaggataatcgccagtatccatgcatggtgtgcaacaagttgtttgtcagcaagagctaccttaatacacatctgagaattcataccggggaaaagccgtacaaatgcgaggtttgcggcaagggttttctcaccagagtcgacctgaagattcattccaccatgcacacgggtgaaaagagtttcgtttgcgaaatgtgcgggaaggctttcgcacgacgcgccgctcttagatgtcataggagatctcacactggggaacgaccttacagatgcgacgtttgtgggaaaacttttacgcagttcagccccatggctatacacaaaagacttcacacgggcgagagaccgtacgagtgcgatatatgcagcaaggctttcgtatccagatcaacaaTGATGTGTCATCGAAAGAAACACCATCTGCCGTCTACTGCTGATCAGAAAGACGACGTCAATGGACAAGTACTAGAGATTATATCCACGGATATAGTCCTAAGAGGGTCACACGACGGGATACAGATCACGGCGGATTAG
- Protein Sequence
- MAVVEEFSELCRLCAAKTSLLLGLPIFETEGELRHIDEKIAACLPVQVSPTDKLPKMVCEECAYKLDQLYDFREKCLRTEGMFLAMLKGVEVEDGQFKEECENSEQIQAMRVMDDMDLAGGEQVVTQEEICQQGGEIQVAGIELDGDTVRMVDQHMREMQDEVSSQQITMHLEGDVTVVSDLTVGGELSQLDINYVTSISPENQDCQIERERENGVHHVDSDSESEVEESGVSEEDTARTDEPLRSVAVASTSGRSGVNSVSNETTVEYTKEAKASLLEATLSNPSIDEAGNSWYVCRLCNEASTEPSSLADHFEVHFCSCACGIYYTSVEALNIHKQHCPTGKNKDVDSAIEDCVGSLLVRTEDNRKPGTTARQKWTPKICTECGKQYRTNYKLQEHMRKHTGEKPFQCLLCDKAFRSKIGLAQHTATHTGQFDYTCSTCGKGFQCKSYLIVHQRVHSDLKPYPCSTCGQNFKTKQSLLDHQNRHLGVKPYMCEVCGKGFITKGLCKSHQKIHSGKDNRQYPCMVCNKLFVSKSYLNTHLRIHTGEKPYKCEVCGKGFLTRVDLKIHSTMHTGEKSFVCEMCGKAFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDICSKAFVSRSTMMCHRKKHHLPSTADQKDDVNGQVLEIISTDIVLRGSHDGIQITAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00060553;
- 90% Identity
- iTF_00938955;
- 80% Identity
- -