Rchl007054.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- -
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000022.1:1187101-1190350[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2 3.1e+02 3.1 2.8 2 23 337 358 336 358 0.80 2 18 0.037 5.7 8.5 0.8 1 19 364 382 364 386 0.84 3 18 0.013 2 10.0 0.9 1 23 399 421 399 421 0.82 4 18 0.0024 0.36 12.3 0.2 2 23 429 451 429 451 0.96 5 18 7.6e-05 0.012 17.0 1.3 1 23 457 479 457 479 0.98 6 18 0.029 4.5 8.9 1.9 1 23 485 507 485 507 0.95 7 18 5.4e-07 8.3e-05 23.7 2.0 1 23 513 535 513 535 0.99 8 18 0.2 31 6.2 0.1 2 19 547 564 546 566 0.88 9 18 0.011 1.8 10.1 3.9 1 23 590 612 590 612 0.98 10 18 0.02 3 9.4 0.1 1 23 618 640 618 640 0.93 11 18 0.021 3.2 9.3 1.8 1 22 659 680 659 680 0.93 12 18 0.005 0.77 11.3 0.2 2 21 688 707 687 708 0.93 13 18 0.055 8.4 8.0 0.5 3 23 717 737 716 737 0.98 14 18 4.4e-07 6.8e-05 24.0 3.0 1 23 747 769 747 769 0.98 15 18 0.0038 0.59 11.6 1.3 1 23 775 797 775 797 0.98 16 18 2.1e-05 0.0033 18.7 1.6 1 23 803 825 803 825 0.98 17 18 0.00077 0.12 13.8 0.7 1 23 831 853 831 853 0.98 18 18 6.4e-06 0.00098 20.4 1.7 1 23 859 882 859 882 0.98
Sequence Information
- Coding Sequence
- ATGGAAAAAGATCGCGGAATGCGGATGAATTTGGTTAATTTACAAAATGATAACAGCATGGAATTGGATGAGAATATCATCGCTTATTTATCTGAAAATAATCAGCAAGCCGTAATTGGCCCCGATAATTCTTCTCGAAGATTCGCCGACCATAGACGTGATCTCAATAAACGATTGCCGAAAGAGAAAGGAGAGGAATGCCTCAGCAAAACGCAAATAGAAACAGCCTCAGAGTCTGCCTCATTATCGCTTGTCGAAGATGTAGTACAAATCGTACCGGACGGATATCATTTAGTTACTTTAGAACCCGAATCGGGAGAAGAATTCTGCAGAGTGATTGGGAAAATAGGATCTGGGGATGCGGAAGACACAGAAAATATTTCAAAGTTTTCTAAAACATCATTTCAACTGAATAATTCCATAACTTTCCCGCTGGTCTGCAGACTTTGCGCAACTCCTGGAAATGATATGGTTTATATGTTCGGGAGTAATAAAACGTACAGAGATATCATTGGAATGATTGAACAGTGTCTAACTATCGTGGTCAAGAAGTCTGATAATTTGCCGAAACAAGCCTGCCGTTCTTGCCTGAAGAGACTGGAACTGTGTTATCAGTTTCACAAAACTGTAGCAGAGGCCGAAAAGCAGCTGCTTATGTTGAGGGGTAAATTATTTTGCGATACCAAGAAGAAAGAGAATCATTGTCGAACCTTGGAGTTGTGCATTGGACAAGAAAGTTTAACAAAAGTTGACGACAATCAAGAAATCATTGAAGAATCTCAGGACATGGAGACAACCGAAGAAGATGACATTGATTCATTGGATTTAGAAGGAATATCTAAGTCTCGCGTTCATTCGATAACAGAATTGAGATCTGAGAAAAGAGGGGGGGAAATAATTGCCGATGAAAAATATGGGAAAGGTGGCACAGTTGGTGATATTCTCTTTGAGGAAGGGAGAATCAAGGATGAGTCTTTTACTGGCCAGATAGTCGACTGCAAATCAATAAAATGTCGAATTTGCGGTCAAGCTTTTCAGACTGCTAAAAAATGTCATATACATTCTAGCGTCCATGCTCTGAAAAATTACTACCCATGCAGTCTATGCGATAAAATATTTACAAGTGAAGAAGACTGCAATGTACATAGTGTAGAACACACAGAGAGCAAAAAGCATGAAAGAAGATCTGCGACTCACGTCTGTGAGGAATGTGGTAAGAAATTTGTAACCGAAGCGAGATTAGAATTTCATAAAATCTACCATAATTCTGATACTAGACCTCGTTACTGTGAAAAATGCGATAAAATTATGGCTTCTGAGTCTTCTCTGTACCAGCATATGCTCACTGTACACAGACAGTATAAGGAATACTGTTGCGACATTTGCGGAAATCAGTTTAGAGCTCAGGCCCAGCTCTCCGCCCATCAAAGAAAACACAAAGACGAACGCCCGTTCGAATGCATAATTTGTAAGAAAAGGTTTTATTCAAATGATATACTGCGGCGTCACAAGAAGCTGCATCTACCCGACAAACCTTATCAATGTGATCAATGCGGGAAACGATTCGACAGAAACAACACTTTGACTAAACATTTGTTAAGACATCGAGTGGAAGCTGGTCAATCGATGATATGCCAAGTCTGCAACGTTTGTAGAGAAGTATTTTCGAATTCTATAACTGCGGAGAATCATTCAGAAGATTGTGCAATTATCGCAGGAGAGAATAACGAGGATAATAAAATACTGGAATTAAAATTGAAAGAAACTTACAGATGCGAATACTGCGAAAGATGTTATACAGAAATTGAATACATGAAGAATCACAGGTCATCTCACAGCGAACCTTTCCCATACATATGCACAATATGTGACACGGCTTACGCGACTTATAATCAAGCTACGGCGCATAAAACAGCGCACAAAAAGACCTCTAAAGTCGCAACTGTTCGAGATGAACTATTAATCCCGAAATATTTTGCCTGCGATTACTGCGACAAACGTTTCCTACATTTTACTAACATGAATATTCACAGACGGTCGTGTTCGAGCGGTAAAATTTGGACGTGTAGATACTGCAAAGCCGTGTTCGAAAATGCTAGAGAACTTTCAAGACATAAAAAGGGAGAAACTAAGGACGAAACTTGGCTGTGTAATGAATGCAATAATGGCTTTGGGTCTGAATGTGCCCTTGAAATCCACAGAGAGACTCATTCCGCTTTACTAAAGGATAAAAAAAACTTTTCCTGCTTATATTGCGAGAAAACATTCACCCAGaaggcgcatctcactgttcatatacggagtcacacaggggagagaccttacagttgcgacctgtgcgacaaggcttataagataaaaaccgagagagataatcaccgcagaactcattctggtgaaaagccattcaaatgttcgatatgcgataagacgttcgccaatacagcgaggctcagagaacacacgagatttcattctggaaaaaggccttacagttgttccctctgcaatcaatcattcaagaaagcgaacgcgaggaatgttcacatgactatacacactggggaaaaaccttaccagtgtgacgtatgcgggactaatttcagacgcaccggtgatATGCGGAAACACAAGAGAACTCAACACGGACAGAAATTAACGACTAAAAGTTAG
- Protein Sequence
- MEKDRGMRMNLVNLQNDNSMELDENIIAYLSENNQQAVIGPDNSSRRFADHRRDLNKRLPKEKGEECLSKTQIETASESASLSLVEDVVQIVPDGYHLVTLEPESGEEFCRVIGKIGSGDAEDTENISKFSKTSFQLNNSITFPLVCRLCATPGNDMVYMFGSNKTYRDIIGMIEQCLTIVVKKSDNLPKQACRSCLKRLELCYQFHKTVAEAEKQLLMLRGKLFCDTKKKENHCRTLELCIGQESLTKVDDNQEIIEESQDMETTEEDDIDSLDLEGISKSRVHSITELRSEKRGGEIIADEKYGKGGTVGDILFEEGRIKDESFTGQIVDCKSIKCRICGQAFQTAKKCHIHSSVHALKNYYPCSLCDKIFTSEEDCNVHSVEHTESKKHERRSATHVCEECGKKFVTEARLEFHKIYHNSDTRPRYCEKCDKIMASESSLYQHMLTVHRQYKEYCCDICGNQFRAQAQLSAHQRKHKDERPFECIICKKRFYSNDILRRHKKLHLPDKPYQCDQCGKRFDRNNTLTKHLLRHRVEAGQSMICQVCNVCREVFSNSITAENHSEDCAIIAGENNEDNKILELKLKETYRCEYCERCYTEIEYMKNHRSSHSEPFPYICTICDTAYATYNQATAHKTAHKKTSKVATVRDELLIPKYFACDYCDKRFLHFTNMNIHRRSCSSGKIWTCRYCKAVFENARELSRHKKGETKDETWLCNECNNGFGSECALEIHRETHSALLKDKKNFSCLYCEKTFTQKAHLTVHIRSHTGERPYSCDLCDKAYKIKTERDNHRRTHSGEKPFKCSICDKTFANTARLREHTRFHSGKRPYSCSLCNQSFKKANARNVHMTIHTGEKPYQCDVCGTNFRRTGDMRKHKRTQHGQKLTTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01411751;
- 90% Identity
- -
- 80% Identity
- -