Rchl000328.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- -
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000001.1:2311867-2314763[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.8e-05 0.0043 18.4 2.6 1 23 266 288 266 288 0.96 2 12 0.0053 0.81 11.2 1.1 2 23 294 315 293 315 0.96 3 12 7.2e-05 0.011 17.1 0.9 2 23 325 346 324 346 0.97 4 12 4.6e-06 0.00071 20.8 8.4 1 23 442 464 442 464 0.98 5 12 0.0015 0.24 12.9 1.1 1 22 469 490 469 493 0.90 6 12 2.6e-06 0.0004 21.6 0.6 1 23 532 555 532 555 0.93 7 12 7.9e-07 0.00012 23.2 1.1 1 23 589 611 589 611 0.98 8 12 0.00017 0.026 15.9 4.0 1 23 625 647 625 647 0.96 9 12 0.00016 0.024 16.0 4.7 1 23 653 675 653 675 0.98 10 12 0.0014 0.22 13.0 3.2 1 23 681 703 681 703 0.98 11 12 4.8e-05 0.0074 17.6 6.5 1 23 709 731 709 731 0.98 12 12 0.00022 0.034 15.5 0.3 1 21 737 757 737 758 0.93
Sequence Information
- Coding Sequence
- ATGGACATTAAAATCGAAGAAAGAATCGCTGTAAATAATTTAGACGATGTTTGTCGGGTTTGTCTATCGTCGGATGAAAATAAAGAATTTATTTTTCGAAATGAAGTTGAGGCTTCAAAAATTGAGGATAAATTTACCCTTTCGCAAAAGCTCCAAGTTTACGGTGGCATAGAGATCTGGGAGGACGATGGACTTCCTACCAAAATTTGCACCGTTTGCATTTCCAAGATTAACGTCGCACACGATTTTCGTGATCAATGTCAAAAGGCTGATGAAAAACTCAGGAAATTATACGGCAAACCTGGCCCAAAAAATAATTCAAAAATTCAAAAGGTTCGCAAGGATCAGCATTGTCAAACGGATGCGTATCTCTTGTCAGTCGGCATCAAGGAAGAAGAAAAAGATAGGATGATGCAGCAGCAAAGTATTGGGAGTATTGATTCTGGAAAGGAGTCGGATAAGGGCCTGAAAGTTCTTCCGAAATTTCTTTATAAAGACGACATTGAGATTGAAGAGCATAAAATTCTGCCTGAATTGAATGTCGAACAACATCAGATAGAGAAAGAAAAGAATTTGGAAAAGAAAAAAGAGGCGTACAGAACGAGGAGGGTTTCGATGTTCAAGAGAATGACTTCTATGGAGAATTTGAAAAGCCATAAGGAAAGACAGAGGCAATACATAAAGAAGAATACAAACTCGAAGTCTGAATCTAACGAGCTGGATTTATGCCCGATTAAAAATAGTAGAATGAGATCTAACAGGTCCATTGATTTTAGCTTGGAATCTGAGCTCTCGCACGCATGTAGTAAATGCAACAGATCTTATTCTACGAAAAAGTCGTTGGAAAGACACGCGGCTACTCACGAAGAGAAGAAATTGAAGTGCAATAAATGTAGCGAGCAGTTTTTCAGAGCTGAGAAATTGATGGAGCATAACAAAGTTCACGATTCTCAGGACAAGCCGAAGCCAATATCGTGTAAAATATGTGATAAAAACTTCAGGAAAACAGATACTATGGTCAGACATCTGAACGTCCATAAAAAGGCTAATCCTAAAGAAGTATTTTCCATTCTGAAAGAAATCAGAGACAGAAGAAAGGGGGAAAATAAAATGGAGAATTGTAGCGAAGATGGAAAGCCAGCTAGCAAGGAAGAAAAGGCTGAGCTTAGCAAGGAAGAAAGCAGCAGCGGAGAAGAGACTGAGACAAAGGAGATGAGCAAACGTCTTCCAATGCCGAGCGAAGATCAGGACTACAACCCAGATTCTCCGAACTCAGAATCCCGCAGCGAAAGCGAAACAGATTCTTTCAATAACTTGGCGTTTTACAGGTGTAAACATTGCACGAAGTGTTACTCGACCAAGAAGTCCCTGCAAAGACACATGTTGATACACGACGAGAAGAAATTTGTCTGCAACGTTTGCAATATGAAATTCTTCAGACCCGATAGACTGAAGAGTCATAGGGACAGGTATGGGCATGACGAAGACAAGGAATGTATGGAGCCGCAGAAGCCGCCGGACGATAAATCCGCGATAAAATTAATAAACAGTTGGATAAGAGAAGAGCTGGATTCGGATAACGAGGGGAAAGGATTCCCCTGTGAAATATGCGGCAAATCTTACGTGACCAAAAAGTCTTTGCAGAAGCATAAGGCAAACATGCACGAAAGTAGAACGGATTTCTGCGCCAATTGCAAGGTTGAGAAATGTAAATGTGCTGAAAAGGCTAGGGACAGTGAGAAAAAGATGGAGAAATCAAAGCCATTCAGCTGTGACGAGTGCAACAAGTCGTTCGAAAAGGAATCTAAACTGGAAAAACATTTGAGAATTCACGAGCGTGCTAAGGAACAACAAGATTCTAATTTCAAACGATTTTTatgccatatttgcagcaaaaccttcagacaaaatactggactgatgtttcacatgcgaacacataccggctacaaaccgcatgtgtgcaaatattgtggccgaggttttacgtcgaattcaaactgcattaatcacgaacggacccacactggggatcgcccttttgtttgtcatttttgcagcgcggcatttgcaaagtcctgtactctgaaagctcacatcacgactcatactggcgaagctaactaccattgtaaaacttgcgggaaatcatttaggagattaaagtacctgaaagagcacagatttactcatacaggggaaaaaccgtacgcctgtaaaatttgtggcacagcttacagtcaTTCTGGTAGTTTATTCGTCCATGAAAAAAAGTGCAAGGCTCAGTACAGCAACTATCAAACTGTCTCCGGACAAAATATACAAAATTATAGCCAGTCTCAGAACAGCGTCAACACAACTTCAGTTATGCCTCCGATAATCCCTATGTTGTCTACTTCGCATCATTTGAGTAATATGAATAATCCTTTGGGAGGTAATGCGAATAAAAGTTACGTTGAAAGTATGCAACGTATGAGTGCTCATGCGGCCGCTGCAGCGGCAGTCGGCAATCCAGCTTTGCATATGCATCCGAATCCCGATGTTTCAGAAATGGCTTCTGCAGTCAGGAGTTTTGCTATAATAGGACAAATGTTTCACTCGTAA
- Protein Sequence
- MDIKIEERIAVNNLDDVCRVCLSSDENKEFIFRNEVEASKIEDKFTLSQKLQVYGGIEIWEDDGLPTKICTVCISKINVAHDFRDQCQKADEKLRKLYGKPGPKNNSKIQKVRKDQHCQTDAYLLSVGIKEEEKDRMMQQQSIGSIDSGKESDKGLKVLPKFLYKDDIEIEEHKILPELNVEQHQIEKEKNLEKKKEAYRTRRVSMFKRMTSMENLKSHKERQRQYIKKNTNSKSESNELDLCPIKNSRMRSNRSIDFSLESELSHACSKCNRSYSTKKSLERHAATHEEKKLKCNKCSEQFFRAEKLMEHNKVHDSQDKPKPISCKICDKNFRKTDTMVRHLNVHKKANPKEVFSILKEIRDRRKGENKMENCSEDGKPASKEEKAELSKEESSSGEETETKEMSKRLPMPSEDQDYNPDSPNSESRSESETDSFNNLAFYRCKHCTKCYSTKKSLQRHMLIHDEKKFVCNVCNMKFFRPDRLKSHRDRYGHDEDKECMEPQKPPDDKSAIKLINSWIREELDSDNEGKGFPCEICGKSYVTKKSLQKHKANMHESRTDFCANCKVEKCKCAEKARDSEKKMEKSKPFSCDECNKSFEKESKLEKHLRIHERAKEQQDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQTVSGQNIQNYSQSQNSVNTTSVMPPIIPMLSTSHHLSNMNNPLGGNANKSYVESMQRMSAHAAAAAAVGNPALHMHPNPDVSEMASAVRSFAIIGQMFHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01414402;
- 90% Identity
- iTF_01411757;
- 80% Identity
- -