Rchl010437.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- -
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000048.1:118264-124409[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.65 1e+02 4.6 1.4 2 23 49 71 48 71 0.84 2 21 0.00017 0.026 15.9 5.1 1 23 77 100 77 100 0.94 3 21 0.0012 0.18 13.3 1.8 1 23 189 211 189 211 0.98 4 21 0.029 4.5 8.9 2.4 1 15 217 231 217 231 0.90 5 21 0.0021 0.33 12.4 1.6 1 23 325 348 325 348 0.97 6 21 0.85 1.3e+02 4.3 3.9 1 14 354 367 354 368 0.94 7 21 0.00068 0.1 14.0 1.1 1 23 475 497 475 497 0.96 8 21 3 4.6e+02 2.5 5.4 1 23 531 554 531 554 0.94 9 21 0.18 28 6.4 3.8 1 20 561 580 561 583 0.93 10 21 0.0051 0.79 11.2 1.6 1 23 592 615 592 615 0.95 11 21 0.00043 0.066 14.6 0.7 1 23 628 650 628 650 0.97 12 21 0.17 27 6.4 3.2 2 23 661 683 660 683 0.94 13 21 0.45 69 5.1 8.7 2 23 690 711 689 711 0.96 14 21 0.011 1.7 10.2 3.1 1 23 720 743 720 743 0.97 15 21 0.029 4.4 8.9 2.0 1 23 760 783 760 783 0.95 16 21 2.3e-06 0.00035 21.8 1.3 1 23 789 812 789 812 0.96 17 21 0.023 3.5 9.2 0.8 3 23 819 840 817 840 0.94 18 21 0.00029 0.045 15.2 0.4 1 23 845 868 845 868 0.97 19 21 3.2e-08 5e-06 27.6 0.4 2 23 875 896 874 896 0.97 20 21 2.4e-07 3.6e-05 24.9 0.2 1 23 902 924 902 924 0.97 21 21 2.9e-07 4.5e-05 24.6 0.3 1 23 930 952 930 952 0.98
Sequence Information
- Coding Sequence
- ATGGCGAGAAAGGGAGGAGCGGTATGCAATAGGCTGTCGGAAGGAGAATCTGCGAAAAAAGATCGAGGAATCAACGAGGCGACTAGAATATGTCAGGGATATGTCAAAGCGAGATCCTCGAGAAATAAAAATAAGGAAAAGGTCTACTGTGACATATGCAAAGTCACTTTCAACGTGAGAGGATCAGAGTACAACAAGCACATGCTGAAGCACAGCAATTTGTACGCATTTCAGTGCGACGTTTGTTCGAAAAAGTTTAAACATAAAAACAATATGAAAAGGCATAAGGTCAAGGTTCACGGAGAAGCTCCTGTCCACAGGTCGAACTGCGGCGCTAAACACCCTGAAGTCAATCTTTCCAAGGCTAGCCGTGCCTTGAATAAGTTGAGGAAGCAGAAAACGAAGGCCACGAGACGATTCGACAGAGCATCCAGAGTCAGCCAATCTTCTGAGGAGTCTTCCCTCGATTCAGAGGATTGCGAAAACGGGACCAGAAAAAGAACTGACCACAGCGACGAGGATAATCCTCTAAGGACCAAAGAGGATAAGAAACGGAGGAAAGATTACACTTGTCACGTTTGCGACGTTACTTTCAAGCTGGGAGGATTGTACAAGAAACACATGGTGAAGCACAGCGATGTGAGAGCATTCAAATGCAAAGTGTGCGGTAAACAATTCAAGAAATCGCGTAACCATTTAAATAAGGACATCCGAGGCAAGGCAGCGAACGGTAGATATCCGAGAATGTTGGAATCTGATAAAATATCGCGAATGTCACCTTCGAGGATTGTCCGGAAATTTAAAGCGAAACGAAGCTGCAAACGCCTCTCGACAACGGACGAACTCAAGGTCGAGGGACTTCCAATAGCTGAGAGAATCGCCTCCGAACCTGAGAGGACAAGCCTTCAATCGCCTACGGTGGAGGAAGTCAAGCCCAAAGGCGTTCTCTACAGGAAATTGACGGACGGAAATTATACCTGCGACATATGCAGCTCCAAGTTTGAACAAAAGAGTAAAATAATGCGGCACATAACTAGCAAGCACAGTTTTCACAGGCCTTTcaaatgcgctacttgctcaaaggctttcaaATCCCAGAGCTGTACCGGTCTTAGAATAATAAAAACTGATTCCGCTGGCCGGTTTATCGTGGGGAGGAATTCGGTGCCTATGGAACTGTGGCAGAGATCGAGCCCGGAGGGAAGATCGTCTTATTCCCTGGTGCCTGTTCTCGGACGGAGTTTAACCAACGGACGAACTTCTAAAGGCAGATTGATACCAGCCAACGAAATCAAGGTCGAAGTCAGCGAGGAAATAGCCGGTGTGAAATGCTCGGCGGAAACTCTCCCAGAATCCGCTCCCTGCGAGGAGACCAGATGCCAAGAGTCACTCGCTCATTTGTGCCAAGTTATGGTGGAATTTCATCCGTGCGATAAATGCGGGATGAAATTTCCCGTCGAGAATATGCTCAAGAGACACAAGATTAGACACACCCGGAAGTACAGCGCTCGCGACGTTGGACTCGGGAAGAAAGATCGTCGTAATCCTCTCAACATATGGAGACACAGGGTGGAGGAGAAAAATGTCCTTTATCTTTGTAGTTTCTGCGATTTTAAATGCCAGAAAAGAACTACACTGACTTCTCACGTTAGCAGGAAACACAAGAGACGTTCGAAAGTTTACCACTGCGGTAGTtgcgactacaagtgtgtaaagaaagagaatttcaacgcccacatatggaggcacagggacgatcaaagagaggctaactttccctgcaagatatgcgatttcaagtCGAAAAAACGGAGCACTTTGGCGTCTCATGTTACGAGGAAACATAAGCGTAACAAGGATGGGGAAAAAGAGAAGGAGGAGTACCGCTGTGACACTTGCGATTACAAGACTTTTGAGAAAGAGAATCTCCAGGCCCATGTCAGAGGGCATAAGGAGAATCTGGAGAAGAGCGAGTCCCTCTCTTGCACCTCCTGTGATTTTAAATGCAAGAATCGCGGGACGCTGGCCTCTCATGTAACAAGGAAGCACAAAGTGGCCGAGGAGTGCAGCTGCAACGTTTGCGACTTCAAATGTTCTAAGAAGAGCACAATGTATTCCCACAAGCGGAGGCACAGGGCAGAGAGCGAAGGCAAGGTCTACAACTGTAACGAGTGTAACTTCAAGACTATAAAAAAGACTTCCCTCTACTCTCACATCAAGAGAAAACACAAGGTCCAAGCCAAAGGTGGTCCTGGGGTCGAACAAGTcacggaatacttttactgcagccagtgcgactacaagaacaaaaataagtacgaactgaaggtgcacgtcgccaggaaacacacggacgattttaaattctcctgcgagacttgcggcaagaaattcaaggtcaagggtgacctcaccaatcatataaggttcaatcacaaggagggacctgtgatctgcgacgtgtgcggcaagacctgcctgaacagcaactctctttacgttcatcagaagttcgctcattacaaggctaaatacgagtgcagaatttgcaagaggcggctagtcacccaggagaacttggatgagcacatgctgagacagcacgaaaaacgcgagaacgttgtgtgcgaggaatgcggaaaaacgttctcccgcaacagccggctcaaagttcacatgagaattcacacgggggataaaccttacgcttgtaatatttgcgggaagtccttcgccagacggactgccctgaaacaacaccttctaatacacacgggaatgaggccgtacgtttgcgatatttgcggcaaatcgtttacgcagaaacccggactcatcagccatcggaaatcgcatcccggatcccatccccctctgcctagggttctcattgatcacatactcaacgacgtcatgaacaactga
- Protein Sequence
- MARKGGAVCNRLSEGESAKKDRGINEATRICQGYVKARSSRNKNKEKVYCDICKVTFNVRGSEYNKHMLKHSNLYAFQCDVCSKKFKHKNNMKRHKVKVHGEAPVHRSNCGAKHPEVNLSKASRALNKLRKQKTKATRRFDRASRVSQSSEESSLDSEDCENGTRKRTDHSDEDNPLRTKEDKKRRKDYTCHVCDVTFKLGGLYKKHMVKHSDVRAFKCKVCGKQFKKSRNHLNKDIRGKAANGRYPRMLESDKISRMSPSRIVRKFKAKRSCKRLSTTDELKVEGLPIAERIASEPERTSLQSPTVEEVKPKGVLYRKLTDGNYTCDICSSKFEQKSKIMRHITSKHSFHRPFKCATCSKAFKSQSCTGLRIIKTDSAGRFIVGRNSVPMELWQRSSPEGRSSYSLVPVLGRSLTNGRTSKGRLIPANEIKVEVSEEIAGVKCSAETLPESAPCEETRCQESLAHLCQVMVEFHPCDKCGMKFPVENMLKRHKIRHTRKYSARDVGLGKKDRRNPLNIWRHRVEEKNVLYLCSFCDFKCQKRTTLTSHVSRKHKRRSKVYHCGSCDYKCVKKENFNAHIWRHRDDQREANFPCKICDFKSKKRSTLASHVTRKHKRNKDGEKEKEEYRCDTCDYKTFEKENLQAHVRGHKENLEKSESLSCTSCDFKCKNRGTLASHVTRKHKVAEECSCNVCDFKCSKKSTMYSHKRRHRAESEGKVYNCNECNFKTIKKTSLYSHIKRKHKVQAKGGPGVEQVTEYFYCSQCDYKNKNKYELKVHVARKHTDDFKFSCETCGKKFKVKGDLTNHIRFNHKEGPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECRICKRRLVTQENLDEHMLRQHEKRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYACNICGKSFARRTALKQHLLIHTGMRPYVCDICGKSFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -