Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: -
Assembly: GCA_944452905.1
Location: CALYCC010000019.1:3548099-3553860[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.15 23 6.6 3.4 2 23 269 291 268 291 0.97

2 21 0.031 4.7 8.8 1.6 1 23 395 417 395 417 0.98

3 21 0.00063 0.097 14.1 0.8 1 23 466 489 466 489 0.96

4 21 0.0026 0.39 12.2 1.6 1 21 535 555 535 556 0.93

5 21 0.085 13 7.4 4.8 2 23 597 618 596 619 0.94

6 21 0.002 0.3 12.6 0.1 1 23 663 685 663 685 0.97

7 21 0.00066 0.1 14.0 0.1 1 23 691 713 691 713 0.97

8 21 0.00045 0.069 14.6 2.2 2 23 753 775 753 775 0.93

9 21 0.0061 0.94 11.0 2.3 3 23 784 805 783 805 0.93

10 21 0.00013 0.021 16.2 1.6 2 23 813 835 812 835 0.96

11 21 0.00017 0.027 15.9 0.2 1 23 845 867 845 867 0.94

12 21 0.014 2.2 9.8 0.6 2 20 926 944 925 944 0.95

13 21 0.01 1.5 10.3 0.5 2 23 964 985 963 985 0.95

14 21 0.00016 0.025 16.0 1.1 1 23 1012 1034 1012 1034 0.97

15 21 0.00021 0.032 15.6 2.9 1 23 1056 1078 1056 1078 0.97

16 21 2.4 3.7e+02 2.9 0.4 1 19 1096 1114 1096 1117 0.86

17 21 0.019 2.9 9.5 3.5 3 23 1179 1200 1177 1200 0.96

18 21 4.7e-06 0.00073 20.8 0.6 1 23 1229 1252 1229 1252 0.97

19 21 0.00028 0.043 15.2 1.4 2 23 1259 1280 1259 1280 0.97

20 21 0.0084 1.3 10.6 0.4 1 23 1285 1308 1285 1308 0.96

21 21 0.00076 0.12 13.9 1.5 1 23 1340 1363 1340 1363 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.15	23	6.6	3.4	2	23	269	291	268	291	0.97
2	21	0.031	4.7	8.8	1.6	1	23	395	417	395	417	0.98
3	21	0.00063	0.097	14.1	0.8	1	23	466	489	466	489	0.96
4	21	0.0026	0.39	12.2	1.6	1	21	535	555	535	556	0.93
5	21	0.085	13	7.4	4.8	2	23	597	618	596	619	0.94
6	21	0.002	0.3	12.6	0.1	1	23	663	685	663	685	0.97
7	21	0.00066	0.1	14.0	0.1	1	23	691	713	691	713	0.97
8	21	0.00045	0.069	14.6	2.2	2	23	753	775	753	775	0.93
9	21	0.0061	0.94	11.0	2.3	3	23	784	805	783	805	0.93
10	21	0.00013	0.021	16.2	1.6	2	23	813	835	812	835	0.96
11	21	0.00017	0.027	15.9	0.2	1	23	845	867	845	867	0.94
12	21	0.014	2.2	9.8	0.6	2	20	926	944	925	944	0.95
13	21	0.01	1.5	10.3	0.5	2	23	964	985	963	985	0.95
14	21	0.00016	0.025	16.0	1.1	1	23	1012	1034	1012	1034	0.97
15	21	0.00021	0.032	15.6	2.9	1	23	1056	1078	1056	1078	0.97
16	21	2.4	3.7e+02	2.9	0.4	1	19	1096	1114	1096	1117	0.86
17	21	0.019	2.9	9.5	3.5	3	23	1179	1200	1177	1200	0.96
18	21	4.7e-06	0.00073	20.8	0.6	1	23	1229	1252	1229	1252	0.97
19	21	0.00028	0.043	15.2	1.4	2	23	1259	1280	1259	1280	0.97
20	21	0.0084	1.3	10.6	0.4	1	23	1285	1308	1285	1308	0.96
21	21	0.00076	0.12	13.9	1.5	1	23	1340	1363	1340	1363	0.96

Sequence Information

Coding Sequence: ATGGATGATGCGGCATCAACACCAAACGTTGATAGTGTATGCAGACTCTGTTTGTCAACGGACGAACCAAAGTTATCAATTTTTGATGGGGATGATTCGTCGGTGCCGCTATCTTCGAAGATACAAGCCTGCCTAGCAATCCAGGTTTTATCTTCTGATAAATTGTCCACTCTCATATGTCGAGGATGCGTGAAGAACGTGAACCAATGGCACAGTTACAGAGATTCTTGTCTCAAGGCACAAGACAAACTTCAGCAATGGCAGGTGCAGCAGATGTCTGCCCAAACGGGCGTGACTATCAAACAAGAACCGATTGATTTGGAATTTGATACTGAGCAGAATGAAGCCATAACTGACTCCACTCATGACCAACAAAATCAAAACGATGGAGTTATGGCGCTGAAAATCACTAACGAGCAAACAATCCGCACGGACAAAGACACGGAGAAATCATTGAGGAATGAAACCCTATCTCGGCGAAGAACCAGGAGCTTTGCTGTGCCTGTTTCCCCGATAAGTGTTTCGCAGGAATCTGAGAAAGGCCAGACAGTATCCAAACCTTATTGCACCATGGAAATAAAAGACGAACCTATGCAAGAGGATGAATACGACTCTCCTCTAGAAATTGAGTCCGTTACCGGTGGCGAGATTTTGCCTAATCCTGTAGCTGTTAATTGTCCCGATAAAGATAGAGTGATGGAGGCTGATTCAACGCAGCGATCTAACTCTACGACTTTTAAAACGAAGAGGAAAGTGAGGAGAGGACCTCACACGCATTTGAGAAACAAGCATGCGTTCAGGAAAAAATGCGTCTATTGTCAGATAAACCTTCATTCGAAATATTCTTACGCAAGACACATGCAGAGGTTTCATACTCCCATCTCAGACTCTGAGCAAAAGGACGACAAGACAGAGTTGAAGTATGTTATAAAGCAGAAACAAAACAGTACAAATTCTCAATCAGCAACATTTCAAGACCAGATTAGATTTAATAGAAATAATTCTCAGGGTGGTAACGGGGATAATATTTACGGAGAAAATGACACGGCGACAAACAGCTACAGGAAAGACGCGGACGAGGAAATGATAGAGGATGTGGAAGACGAGATAGACAAGATGGACAAGAACTCTGATACCCCGTTGTCTCAAGTACAACAAAATATAATCGGTCAATTAAAGACCTACTCTTGTTACTCTTGCAAACAAGTTTTCCCGGATCGTCGAAGCACCTTGAATCACCTCAGACAACATTTACCAGATCTTAGACCATTCACCTGCGTAGCTTGCCTCACCCAATTCCCGGATCGTTCGATCTACAAAGACCATTGCTACACGTCGTTTGAATGCGCGATGAAGATAGCTATAGTAGAGCCGAAGTCTGGCTTGGAGAAATACTTCACTTGCAATATGTGCTCGAAATCAGTAGCCAATAGAAAAGAATTGCTGCAACATTTGACTAGCCAACATTCTGAGGAGCAACAGGCCAACGCCATACCAACGTCGTCTAAAAAACCTGCCAAGATAGTCAGCAACGAACCTTCTTCACCGTCTGCTTCTTCGAACTTACCTGGCCCTTACGAAAACGGGAATCCTGCATTTAATCACCCCTGTAATTACTGCGGAATGATTTACAAACATGTACGTAACTTGAAAGAACATCACCAAGTTTGCAGCCGGCTTCCGGTGAACGTCAGGACGTCTTATGCCTGTATACATTGCAGAATGACTTTCTTGGTGTTCAGGAAATTTGTCAGCCATCTTAGCGCCGTTCATAATACTACAGACATCACGTGTTCAAAATGTCACAAGATTTTTAATACTGGACCAGATTTCTTGGCCCATCATGAAAAGCATCATAGGAACGAGGGCGCCCATGCCAATAAAGATAACGGGAGGTCTTCTACTAGCTTTGAAAGTCCTTTGAAGGATTGGAACGATTTTGAGGCCGAGGTACACGCAAATGAATCCAGAATTAGCCGGCAGAAATACAGCTGCGCTTTATGTGGTCAAGAATTTCCTACCAGAACTGAGCTGGGCGAACATAGAAATCTCCACTTGAAAGTCAAGATATATTCCTGCGTTATTTGCCGCAGCATGTTCAGCAGCGCTGGGGCTCTTGAAGTTCACATGAAAGACCACGGCATAGAAGATCCAGCAGAACAAAGCGCACATACATCTTGCGTTGAGTACGAGGGTACAGAGGATACAAAGGATCTTAATTTAACAGACGGTTCTGAGTCTGATGTGGAGGAAAGGACTTGCAAAATCTGCAACAAGTCTTTCTCGAGTACAGCTAACCAGAAAAGACACACTACAAACGTTCATAAGAATACTAAAAATCGTCGGAAATGCATAGACTGCAACAAGTTTTTCAGCAAGAAGAATTCATTCGAGTATCACCTGAAAACTGAACACAGAAAATTAACATCACCTATAAAATGCCCGGTTTGTAACCATTCGTTTAATACTAGGGCGAGTTTCAATTCCCATTACGAAACCCTTCACGCCAATGCGGCAAAGATTGAAACTCCATACGAGTGCGATATTTGCGGTAAACAATTCAAAGAGGAAATGTCTTTGAAGATACACAGGGGATGGCATGCTCGCAGAACGCGAAGATTGAACGAGGAGATATCTGTTATCAATCGTAACAGAGCTTTGCTCGCCCCAAAGCCTCAGGACAACTTTGACAACTTTAAGACTTTAACGGAAAGGCCTGCAAGAGCGAGAAAATCGTTCCCAAACTCACCGCCGGCAAAGCCTCTGCCGCAATTACAGTGCCAGGTTTGTGACCACAAGTTTACCGAGGTCACTGAATTGAGGAAACACCTTTGGGATGTTCACTGCGCTAGAAATAAAAGCGAGAAAAATTATACGACCAACGATCTGCAGTGCGAATTATGCACTCATACATTGCCGGACAGAACCAGCTTGGAAAGGCACTTGGAATGGCATATGGAAAACCCGATTTTAAGCGACTCTAAGAACGGAGTGAAGAGGAAGCGGTATTACACGCCCAGGGAGCTGAGGACTCATCCCTGTGATATTTGTGGGAATTTTTACACATCAAGAAGGAGTTTGTTGAGGCATCAAAAGCTCCATAAAGTTAGCACCGCTGCTGCAGTCAAGTTTCAAGCTATAGCTAAGAAACCTTTGACTACTCAGTTCCCTTGCAATGTTTGCCACAAGATATTTGACACTTCTATGAAACTCCGGAAACATAGAGTACGCCATTTCGTGAGCCCCGCGGAACGCAAGCGGCATTCAGTTCTCGAGAAATCTGACTTCAAGTGCGATCTGTGCTTGAAATATTACAGCTCAGAAGTTGGACTGCGTTTTCATCTGGAAAAGACTTGTCCTTATCGTTCACAAGAGCCAAACAATTCGCGGTCTAAACGTCGTAGAGTAGCCTCGATGGGAGAAAGCGGTGCCTCGAACGAAGTCGACCCACCTAAACCCACGCCTGCTCTGACTTCTAACAATAAACAAAATTTCAATCATCCCGTTGGCTGGAGGGTTAAAAAAATGGTCAATTGTAGCATATGCCACAAGTCCTTCCTCGGCAAGAGCTTGTTTTATAAACATAGGAAGACTATGCATCAGAAGGAGATATTTGGCCGCAGTACCTTGCTTCTTAACAAGCAAGTCGGCTCTACGCCAAACCCGTCGGTGGATGGTGGGAATTTTTGTTGCAATATATGCGGCAAGGAGTTCCCTGGAGCGACGAATCTCAAGCTGCACATGTCTACTGTTCATAAAATGGCGAATCCAAACACTTGCAGTGTTTGTCATGCAACATTCACGACTAATGTTGGCATGAGAAATCATATGCAAGTACATTCTACAGATAGTTTCAGCTGCAATCTTTGCCAACGAATATTCCGCTCCCGGCCAGCTGTATTGATTCATCTTAGCAGACAGCATCCTGACGAATATGACATCATGCAAGACGACAGAACTAAATTGTTCACTGAACTATTGGGAAAACCTAATGCCGAAACTGTCGGGCCGAGGTCATATGACTGTGGGTATTGCCACATGACTTTTGACTCTAACAAAGGTCTCAGAGTTCATGCTATGAAGCGTCATTCCGTTCGTCACTAA
Protein Sequence: MDDAASTPNVDSVCRLCLSTDEPKLSIFDGDDSSVPLSSKIQACLAIQVLSSDKLSTLICRGCVKNVNQWHSYRDSCLKAQDKLQQWQVQQMSAQTGVTIKQEPIDLEFDTEQNEAITDSTHDQQNQNDGVMALKITNEQTIRTDKDTEKSLRNETLSRRRTRSFAVPVSPISVSQESEKGQTVSKPYCTMEIKDEPMQEDEYDSPLEIESVTGGEILPNPVAVNCPDKDRVMEADSTQRSNSTTFKTKRKVRRGPHTHLRNKHAFRKKCVYCQINLHSKYSYARHMQRFHTPISDSEQKDDKTELKYVIKQKQNSTNSQSATFQDQIRFNRNNSQGGNGDNIYGENDTATNSYRKDADEEMIEDVEDEIDKMDKNSDTPLSQVQQNIIGQLKTYSCYSCKQVFPDRRSTLNHLRQHLPDLRPFTCVACLTQFPDRSIYKDHCYTSFECAMKIAIVEPKSGLEKYFTCNMCSKSVANRKELLQHLTSQHSEEQQANAIPTSSKKPAKIVSNEPSSPSASSNLPGPYENGNPAFNHPCNYCGMIYKHVRNLKEHHQVCSRLPVNVRTSYACIHCRMTFLVFRKFVSHLSAVHNTTDITCSKCHKIFNTGPDFLAHHEKHHRNEGAHANKDNGRSSTSFESPLKDWNDFEAEVHANESRISRQKYSCALCGQEFPTRTELGEHRNLHLKVKIYSCVICRSMFSSAGALEVHMKDHGIEDPAEQSAHTSCVEYEGTEDTKDLNLTDGSESDVEERTCKICNKSFSSTANQKRHTTNVHKNTKNRRKCIDCNKFFSKKNSFEYHLKTEHRKLTSPIKCPVCNHSFNTRASFNSHYETLHANAAKIETPYECDICGKQFKEEMSLKIHRGWHARRTRRLNEEISVINRNRALLAPKPQDNFDNFKTLTERPARARKSFPNSPPAKPLPQLQCQVCDHKFTEVTELRKHLWDVHCARNKSEKNYTTNDLQCELCTHTLPDRTSLERHLEWHMENPILSDSKNGVKRKRYYTPRELRTHPCDICGNFYTSRRSLLRHQKLHKVSTAAAVKFQAIAKKPLTTQFPCNVCHKIFDTSMKLRKHRVRHFVSPAERKRHSVLEKSDFKCDLCLKYYSSEVGLRFHLEKTCPYRSQEPNNSRSKRRRVASMGESGASNEVDPPKPTPALTSNNKQNFNHPVGWRVKKMVNCSICHKSFLGKSLFYKHRKTMHQKEIFGRSTLLLNKQVGSTPNPSVDGGNFCCNICGKEFPGATNLKLHMSTVHKMANPNTCSVCHATFTTNVGMRNHMQVHSTDSFSCNLCQRIFRSRPAVLIHLSRQHPDEYDIMQDDRTKLFTELLGKPNAETVGPRSYDCGYCHMTFDSNKGLRVHAMKRHSVRH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01411743; iTF_01414393; iTF_01412543; iTF_01413606; iTF_00939797; iTF_00938937;
90% Identity: iTF_01413606; iTF_00939797; iTF_00938937; iTF_01414393; iTF_01412543; iTF_01411743;
80% Identity: -