Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: -
Assembly: GCA_944452905.1
Location: CALYCC010000097.1:1001098-1015096[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0053 0.82 11.2 4.0 1 20 461 480 461 482 0.94

2 17 0.19 29 6.3 0.8 1 23 538 561 538 561 0.92

3 17 0.00013 0.02 16.3 1.1 1 23 594 616 594 616 0.98

4 17 3e-05 0.0046 18.3 1.4 1 23 622 645 622 645 0.97

5 17 3.2e-06 0.00048 21.3 0.4 1 23 651 673 651 673 0.98

6 17 1.3e-06 0.0002 22.6 1.8 1 23 679 701 679 701 0.97

7 17 0.0001 0.015 16.6 0.7 1 23 707 729 707 729 0.98

8 17 0.00037 0.056 14.9 4.0 1 23 735 757 735 757 0.96

9 17 0.00023 0.035 15.5 0.9 3 23 765 786 764 786 0.96

10 17 0.00032 0.049 15.0 0.0 2 23 828 850 827 850 0.96

11 17 0.0015 0.23 12.9 0.5 3 23 894 914 893 914 0.98

12 17 6.1e-06 0.00094 20.4 3.2 1 23 929 951 929 951 0.96

13 17 0.00014 0.022 16.1 0.6 1 23 979 1001 979 1001 0.99

14 17 0.0034 0.52 11.8 2.4 2 23 1008 1030 1007 1030 0.94

15 17 0.0053 0.81 11.2 0.1 1 23 1158 1180 1158 1180 0.97

16 17 0.038 5.9 8.5 0.7 1 23 1186 1209 1186 1209 0.93

17 17 0.0021 0.33 12.5 0.1 2 23 1212 1234 1211 1234 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0053	0.82	11.2	4.0	1	20	461	480	461	482	0.94
2	17	0.19	29	6.3	0.8	1	23	538	561	538	561	0.92
3	17	0.00013	0.02	16.3	1.1	1	23	594	616	594	616	0.98
4	17	3e-05	0.0046	18.3	1.4	1	23	622	645	622	645	0.97
5	17	3.2e-06	0.00048	21.3	0.4	1	23	651	673	651	673	0.98
6	17	1.3e-06	0.0002	22.6	1.8	1	23	679	701	679	701	0.97
7	17	0.0001	0.015	16.6	0.7	1	23	707	729	707	729	0.98
8	17	0.00037	0.056	14.9	4.0	1	23	735	757	735	757	0.96
9	17	0.00023	0.035	15.5	0.9	3	23	765	786	764	786	0.96
10	17	0.00032	0.049	15.0	0.0	2	23	828	850	827	850	0.96
11	17	0.0015	0.23	12.9	0.5	3	23	894	914	893	914	0.98
12	17	6.1e-06	0.00094	20.4	3.2	1	23	929	951	929	951	0.96
13	17	0.00014	0.022	16.1	0.6	1	23	979	1001	979	1001	0.99
14	17	0.0034	0.52	11.8	2.4	2	23	1008	1030	1007	1030	0.94
15	17	0.0053	0.81	11.2	0.1	1	23	1158	1180	1158	1180	0.97
16	17	0.038	5.9	8.5	0.7	1	23	1186	1209	1186	1209	0.93
17	17	0.0021	0.33	12.5	0.1	2	23	1212	1234	1211	1234	0.94

Sequence Information

Coding Sequence: ATGGAGGCTGGAACCTCAGAATTGCTTGAAACATGCGACGAGTCGAGAATGTTGATTGAGACTGTAGGTGGGATTGTAGAGAAGGATAGTACCGAAGGTGAAAATTATTATGTGGTAACGGAAGTTAATGGAGATCAGACAAATCTGATACAAATCACAGAAGCAGAGAAACTTGCCGACGGGACTGATTCAAATGAACAAAATCAACCATGGACTGAGTTGTGTAGAATATGCGCCAATACTAGTGATCATTTGATCCCAATTTTCAAAGGAGAAGGTCTCGAGCATGAACTCAACAACAAGATACATAAATACTTACCTATTCAGGTTTCTGAGGAAGACAATCTGCCCTTGCATTTGTGTTATCATTGCGCAGCTACATTATTGGCATGGCATGAATTAGCCGATGGTTGTTTGGACGCTGAGCAACGACTTCTGCAAATGCAAAATGAATTTCCACAAGCACATAGGCCTACCATATTAGACGAATCATTGAATGAAGTGAGTGCTGCTCTGACAACTGAAAATACTGAAGTATCAATCAAAAATCAGTTGTCGCAAGAGGACTTCGTAGTTAAAGGAGAATGCAACGAAGAGTCAACAGCAAACGATTCTGACAGGTCCAGTAGAACCCAGATGACTTTCAAAGCATTCCTAGACTCGCAGAGTGTTTTTTGGAGGCCATACAAAAAAACAAACCAGAGAACCAACGGGAAACCTATTTTAGAAGATGATACCGAATCAATATGGATCGCAATTCCAGATTCTGCATTCGATGATCCCCCAATGGCATCTGATCCGCTGCAATTTAATGATTCGCTGTTACACCATCAGCACCAAGAATCTCGTGGAGTTTACAGTCAGGGCGTAGCCAAAGAATATGTTAAATTAGACGGAGAGAAAACAGTAACTAAGAATGAAGGAGGGGTTGAGAAAGAAAGATTAGATAATAAGTGCTCGCAAGAGATTCGAATTTCGAAAACGTTATTCCAACACTCCGAGTCACAGAAAAAAGCAGAGGATAAAGCCACCCAAGATATACTTGACTCAAAAATATTAGCCGATCGAATTAAGTTGCAGGGAGTTGTCTGCGAAACGCACGAATCTTACCGATGTTTGGAGTACAACACGACAGGAAAGAAATCCTTTGCGGCGTTTAGAACAGCTCGAAAAGAACTTATATCCAGAAATACTCCTCAACAGACAAATTCTAATGATCAGGACTACCGAGAAACCCTACGGGCTTCTCTGCCTTTAGAATTATCTGAGCAAGCTGATAAGATAACAGTTGAAACTAGTCGTAGGCGGGAGGTTTCAGCGCAAAAATTTCACCCCACTGGAGAATCCATTGAATATCAATCGCAAAATACGAAATCGTCCTATTCCTGTCTGAACTGCCATCGAATATTTAAAAGAGAATTCCATTTCAAACGTCACGTCATAAAATGCAAGAGTGAGCATTCCGAAGCTGAATTAGTTACTGAAAATTCGTCAACTGGAGTGGAAGAGTTTACCGAAAGATCAGAAGATGCCATCGACGAGGTGAAATCAAAGAAATTGGAAAACGATTGGGATTTAAGTAAAAGGGAGAGAATGAATAAGCTTAGGTCTTATCCTTGTATGCACTGCAATTACTCGGCGAACAAAAAGCGATTACTTGACGCCCATTATTTGGATGTTCATCGCGAAGTTTCGCGAAAAAAACAAATGAAAAAGTCAAGAAGTATAGATAAGGAGACGATAAAACGGGCACGCGTAGAAGTCGATGGCAAGGTCTACTACCACTGTAACGATTGTGGGAAGGATCTCTATTCTCCTTATACTTTTTCGTGGCATATTAGAATTCATACAGGGGAGAGACCTTACACCTGCCATCTGTGCGGTCGTCAGTTCCGGGTTAATCAAGGCTTGGCAAGACATTTGCGGGAAACTCATGCAGGCATTAAAAAATTTCCATGCGATATATGCGGAAGAATGTTTTCCACTAAACGCAACGCTCAGGATCATCGACGTATTCATACGGGGGAAAGACCCTTCGCATGTAAAACATGCGGGAAATCATTCAAACAAAAGGCATCATTGTTTGTTCACAATCGTACTCACACAGACTTTTTTCCATTCAAATGCAACTACTGTAATCAAGGCTTTCGCACCAGACCTCCGCTCATGGTTCATATAACTAAACACACCGGTGAAAAACCCCATGCCTGTGATATTTGTAATCGTCATTTTCGCATAAAGTATGAACTGAAACGACATCGGCTCGTACATTTTGAGGAAAAACCTTGGCTTTGCACTGACTGTGGACTTTCGTTTAGACAGAAGCGTTATTTAGTCAACCATAATAAGATAAATCACAGCGCTAATCATAACGAATGTTTGTTTTACAGGTTGAATGGCGAGGAATATACGGTGAGCGTGTTACAAATACCTAAAGCAGAAATTGAGGAATCTTCTTACGAAGAAAGACTAGAATACGTCGAGTGCGGGGAATGCGAGGCAACGTTCATTCAATTCTCAGATCTTGCCGCTCACATGAATTCCGAACACAATGATTTTGTCCATTATTGTACTCATTGCCGGACCGTATACCGAGGAGACGTTAAAGACTTCACAGAACATGAGAAAACACACGCAGCCGATAATAAGTCAGCCAAGAAAGCCTCAAGAAACGTATTTTGCTCTTTGTGCAACGAAGAATTTAGCTCGATTGCGAAGCTTAAGCAACACTTGATTACACATGTGAATCAAAGACGGATCTTGAAGAAAACTGAACCCAAATCTTATAACTGTGATAAATGTGATAGAATTTTCTCCCGAAAGTACGACCTGAGACGACACTTACATGCACACCAAGATCTTGGATACATAGAAAATAGGGAAGAGGTGGAGATTTTAAACTCTGCTAAGGTCATTATAGACGATCGTTGTTTCTACAAGTGTAACACCTGTGGAAAAGATATCATAACAAGGCGAGGATTTTTACGTCACATCAGGATTCACACTGGACAGAAACCCTGCAGATGCCATATTTGTGGCAACCAATATCGGATAAAACAAGACTTGGCAAGACACATCAGAGACGTACATGAACGCATAAAAAGGTGTTTGCTGGAGGAAGAGGAAATCAAGCCATCCATTCTCGATACCATTGACGAAAGTGTTGATCGTAAGGAACAATTTACATATGGGGATACTATAGACGTTACAGTAATGTATTCTAAGGAAGAAAATGGTAAAGAATTTGAAGAAGATTCCTTTGTTCTAATGATACCACAGAGTAAACCGGACAATCCTGACGCACGTGCTTACGGATGCCGTACTTGTGATATCTACAATTTAATGTTTAGCGAATTTTCCGCGCATGTAAGCAGGCATTCGTCAGACAATGGGGACTGCGGCGAAGAATATGAAAGCCAGGAAGCGTTGCATGCTGCAGTTGCTCATTCCCTTCAATCCACTGTGGCCAATTTTAATTGTCAAATTTGCGACAGCAAATTCGATACCGAGACAGCGTTGTTAGAGCATCTGGAAATTCACACCCAAGAAGAAACTCATAAGTGCGAATTTTGCGGGATGGATTTTGACGCTTTGACAAGTCTTCAGTCTCACGTTTCTCTTCAACACTTTATCCCTTGCCAGGACTGTGACCAACGATTCGACACAGACCAGCTCCTTCAAGATCATATCAAAGACGCTCACTTGGATAAGCGTCACGACTGCCAGATATTTCCGGCACTTGAGACATTTCAAAGCTTCATAACTGCCGGAAATATCCGGCAGTTGCGACACTCGCACGTGGTAGTGGATGCTCTCGCCGTCTCGCTGTCAGAGGAGCGAACTAATTTCGCCTCAAAAATCGGGGCGCCTACCATATTCAACCTGCATGCCATTCGTGTGAGACACAAATTTATTGCCTAA
Protein Sequence: MEAGTSELLETCDESRMLIETVGGIVEKDSTEGENYYVVTEVNGDQTNLIQITEAEKLADGTDSNEQNQPWTELCRICANTSDHLIPIFKGEGLEHELNNKIHKYLPIQVSEEDNLPLHLCYHCAATLLAWHELADGCLDAEQRLLQMQNEFPQAHRPTILDESLNEVSAALTTENTEVSIKNQLSQEDFVVKGECNEESTANDSDRSSRTQMTFKAFLDSQSVFWRPYKKTNQRTNGKPILEDDTESIWIAIPDSAFDDPPMASDPLQFNDSLLHHQHQESRGVYSQGVAKEYVKLDGEKTVTKNEGGVEKERLDNKCSQEIRISKTLFQHSESQKKAEDKATQDILDSKILADRIKLQGVVCETHESYRCLEYNTTGKKSFAAFRTARKELISRNTPQQTNSNDQDYRETLRASLPLELSEQADKITVETSRRREVSAQKFHPTGESIEYQSQNTKSSYSCLNCHRIFKREFHFKRHVIKCKSEHSEAELVTENSSTGVEEFTERSEDAIDEVKSKKLENDWDLSKRERMNKLRSYPCMHCNYSANKKRLLDAHYLDVHREVSRKKQMKKSRSIDKETIKRARVEVDGKVYYHCNDCGKDLYSPYTFSWHIRIHTGERPYTCHLCGRQFRVNQGLARHLRETHAGIKKFPCDICGRMFSTKRNAQDHRRIHTGERPFACKTCGKSFKQKASLFVHNRTHTDFFPFKCNYCNQGFRTRPPLMVHITKHTGEKPHACDICNRHFRIKYELKRHRLVHFEEKPWLCTDCGLSFRQKRYLVNHNKINHSANHNECLFYRLNGEEYTVSVLQIPKAEIEESSYEERLEYVECGECEATFIQFSDLAAHMNSEHNDFVHYCTHCRTVYRGDVKDFTEHEKTHAADNKSAKKASRNVFCSLCNEEFSSIAKLKQHLITHVNQRRILKKTEPKSYNCDKCDRIFSRKYDLRRHLHAHQDLGYIENREEVEILNSAKVIIDDRCFYKCNTCGKDIITRRGFLRHIRIHTGQKPCRCHICGNQYRIKQDLARHIRDVHERIKRCLLEEEEIKPSILDTIDESVDRKEQFTYGDTIDVTVMYSKEENGKEFEEDSFVLMIPQSKPDNPDARAYGCRTCDIYNLMFSEFSAHVSRHSSDNGDCGEEYESQEALHAAVAHSLQSTVANFNCQICDSKFDTETALLEHLEIHTQEETHKCEFCGMDFDALTSLQSHVSLQHFIPCQDCDQRFDTDQLLQDHIKDAHLDKRHDCQIFPALETFQSFITAGNIRQLRHSHVVVDALAVSLSEERTNFASKIGAPTIFNLHAIRVRHKFIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -