Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: -
Assembly: GCA_944452905.1
Location: CALYCC010000048.1:133233-144430[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 7.9e-06 0.0012 20.1 0.7 2 23 49 70 48 70 0.96

2 27 0.57 87 4.8 0.3 1 23 85 107 85 107 0.96

3 27 0.67 1e+02 4.6 3.0 1 23 113 136 113 136 0.92

4 27 5.3e-05 0.0082 17.5 6.0 1 23 142 164 142 164 0.97

5 27 0.0044 0.68 11.4 0.4 1 23 168 190 168 190 0.98

6 27 0.00087 0.13 13.7 1.9 3 20 198 215 196 218 0.92

7 27 0.0017 0.27 12.7 1.3 1 23 224 246 224 246 0.95

8 27 0.063 9.7 7.8 0.5 2 17 312 327 311 328 0.89

9 27 0.0013 0.2 13.1 0.7 1 23 481 503 481 503 0.98

10 27 0.37 57 5.4 0.8 2 12 511 521 511 526 0.87

11 27 0.018 2.8 9.5 1.8 1 23 554 577 554 577 0.95

12 27 0.025 3.8 9.1 3.6 1 23 585 607 585 607 0.98

13 27 5.5e-05 0.0084 17.4 1.6 3 23 620 640 619 640 0.98

14 27 0.003 0.46 12.0 2.3 1 23 655 677 655 677 0.98

15 27 7.1 1.1e+03 1.4 0.3 3 13 685 695 684 697 0.86

16 27 0.00056 0.086 14.3 1.0 2 23 786 807 785 807 0.96

17 27 0.00019 0.03 15.7 1.3 1 23 1027 1049 1027 1049 0.95

18 27 5e-07 7.7e-05 23.9 2.3 2 23 1056 1077 1056 1077 0.98

19 27 1.2e-05 0.0018 19.5 4.7 1 23 1100 1122 1100 1122 0.95

20 27 0.00038 0.058 14.8 4.4 2 23 1128 1149 1127 1149 0.97

21 27 0.0013 0.2 13.1 0.1 1 23 1154 1176 1154 1176 0.98

22 27 4.4e-06 0.00068 20.9 0.9 1 23 1184 1206 1184 1206 0.98

23 27 0.00042 0.064 14.7 0.3 3 23 1248 1268 1246 1268 0.96

24 27 2.3e-06 0.00036 21.8 1.8 1 23 1274 1296 1274 1296 0.96

25 27 6.5e-08 1e-05 26.6 0.2 1 23 1302 1324 1302 1324 0.98

26 27 4.6e-07 7.1e-05 24.0 0.9 1 23 1330 1352 1330 1352 0.98

27 27 0.0019 0.3 12.6 1.7 1 21 1358 1378 1358 1379 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	7.9e-06	0.0012	20.1	0.7	2	23	49	70	48	70	0.96
2	27	0.57	87	4.8	0.3	1	23	85	107	85	107	0.96
3	27	0.67	1e+02	4.6	3.0	1	23	113	136	113	136	0.92
4	27	5.3e-05	0.0082	17.5	6.0	1	23	142	164	142	164	0.97
5	27	0.0044	0.68	11.4	0.4	1	23	168	190	168	190	0.98
6	27	0.00087	0.13	13.7	1.9	3	20	198	215	196	218	0.92
7	27	0.0017	0.27	12.7	1.3	1	23	224	246	224	246	0.95
8	27	0.063	9.7	7.8	0.5	2	17	312	327	311	328	0.89
9	27	0.0013	0.2	13.1	0.7	1	23	481	503	481	503	0.98
10	27	0.37	57	5.4	0.8	2	12	511	521	511	526	0.87
11	27	0.018	2.8	9.5	1.8	1	23	554	577	554	577	0.95
12	27	0.025	3.8	9.1	3.6	1	23	585	607	585	607	0.98
13	27	5.5e-05	0.0084	17.4	1.6	3	23	620	640	619	640	0.98
14	27	0.003	0.46	12.0	2.3	1	23	655	677	655	677	0.98
15	27	7.1	1.1e+03	1.4	0.3	3	13	685	695	684	697	0.86
16	27	0.00056	0.086	14.3	1.0	2	23	786	807	785	807	0.96
17	27	0.00019	0.03	15.7	1.3	1	23	1027	1049	1027	1049	0.95
18	27	5e-07	7.7e-05	23.9	2.3	2	23	1056	1077	1056	1077	0.98
19	27	1.2e-05	0.0018	19.5	4.7	1	23	1100	1122	1100	1122	0.95
20	27	0.00038	0.058	14.8	4.4	2	23	1128	1149	1127	1149	0.97
21	27	0.0013	0.2	13.1	0.1	1	23	1154	1176	1154	1176	0.98
22	27	4.4e-06	0.00068	20.9	0.9	1	23	1184	1206	1184	1206	0.98
23	27	0.00042	0.064	14.7	0.3	3	23	1248	1268	1246	1268	0.96
24	27	2.3e-06	0.00036	21.8	1.8	1	23	1274	1296	1274	1296	0.96
25	27	6.5e-08	1e-05	26.6	0.2	1	23	1302	1324	1302	1324	0.98
26	27	4.6e-07	7.1e-05	24.0	0.9	1	23	1330	1352	1330	1352	0.98
27	27	0.0019	0.3	12.6	1.7	1	21	1358	1378	1358	1379	0.95

Sequence Information

Coding Sequence: ATGCTTGTATTCATGCCAGCTGTTAAATTTGACAATAAAACAGCCGCGAAGGACGAAGAAAAAGGTGGCAAATTTACCGCAGAAGTGTGCGGTGCTCTGATTAGTCGTCTTTTGAAAGGGGATAGGGAGGAGGTTTTGCAATTGATTTGTGACTTTTGTGACAAAAAATTTCCGAACAACTCATCCCTGGCTAGTCACAGGCGAAGTCACAAGCCGAACTACATTCCCGAGAATTCTAACCAGCCGAGTTTATACGAGTGCGATTTTTGCGGGATTAAAATACGGCTGAAAAATGTGTTCGCGGAACACAGGAGACTCCATACCGGCAAGAAAACCTACCGTTGCGAATTATGCGAGCAGTTTTTTGCCACCCATCAGAGACTCTATTATCACAAAGTGAGAGAGCATGTCAGGGAGACACCGTTCTGCTGTAAGATATGCCCGAAGAAATTCAAGCTCAAACAACATCTCAACGTTCATATGAAGATACACAACAAAGTGTATGTATGCGACGTCTGCGGGCTTGCTATGGCGACTTTGTGTAACTTGGAACAGCACAGGAAGCGGCACAACAAGGAGTACCATTTGTTTTGCCACCTTTGCTCCAAGGGGTTCTACAACAAGTCCAGCCTTCGACAACATCTCCCTattcactctggtgagaaaccgttcaaatgcggagtttgcaagtcttccttcaccacaagaggatatctgaagcttcattcgttgctacacgaggagacggagaagaagcacagGACTGAGGGAACAGGGACGGAGAAACTGAAAGACCCTCTGACTGCTAGCAACCGGAATTCTAAAACTGGAAAGCGAAAAGTTTCGGCTTCCAAGTCGAGGTCTAGAATTATACTCGATAGGAAAAATTCTGAGAAAAAATCGAGGATCGATATGATTCCTTCGGGGCCTATAGAATGTCAGATATGCAAGAAGGTATTCAAGAAGACCAAGTACCTCAGGTCGGCTTCGCTTCTGAGCTTCATGAATCGACCAAATCTCCAGACTATTTCCTCTGGACGTGCAAAACTTCGACTAACGTCTGAAGTTACCCCGGATTTCACAAAGCCAGAACGCGACGAGCCATCGGACGAGAATTGTCAGTTTACCCAGTTTACACCCGAGAATTCGATAGTCCAAGAGTATTGCATCGACTTGCCTTTGCGCCAAGACGAGGCGGAGGCAGAGGAAGAGGAAGAGGAAGAGGTAGAAGCGGAGGCAAAGGCAGAGGCAGAGGCAGACGCAGACGCAGACGCAGAGATAGAGATAGAAGTCGAAATAGAGGCAGAAACGAAAGTTAAGAGAGAGGCGGATGATTTCGCGCTAGAAAACGGCGACGAGATTAAGGAGCGAAAATACGGGCGTAAACGTAGATCCAAGTGCGCCGAGCGTAGATCCTCTTCTTACCCGGCGCAGTCTTTTTACGAGTGCGATCTGTGCGGGAAGAGGATCCGTAACCGAATTCTGTTTGCGAAACACAGACAGAATCACGACAGGAAACCGGATGTGAATCGTTGCCAGGattgcgacaaggaattctccgacgacgaaaaGTTTCATTTTTTCGCCGGATTTGGGAGTAATCGAAACGGCGGAGATTCGTTTCTAAGAGCTGCTAGACGAATCCGATCGGCCGGCCCTTTCAAATGCATCATCTGCAACTGCGGATTCAAATCCAGTCCTTCTTTGAAGCAGCATGTGTCCAAGGTGCACGGGGCAGCGCTACCGCAAAAGTTCAAATGCCATCATTGCGATTTTGAAACAGACTGGAAGGGGAATCTTCGCGGTCACATGCGACTTCACGTCTACGAACTTCCAGGCGGGAGGAAAAAACGAGCTTGCAATTTGTGCGAGAGGACCTTTTCGAACTACCAGAATTTGCTCAATCATAGAAAGACACACAAGCCGGTACGCATTTCACCGGATTCTTGGGAACCACCGACGTTCGAGTGCGACTATTGCGGATTGAGGCTTGAGAAGCGAAAACAATTCTCCAAGCACAGGAGGCTACACGTTAGATCTCTCAGAATGGCTTGTCCCGTTTGTCACAAGTGGTTCAGATCTAAAAAAGCCGAAGAGAAGCCCCGCCGATGTTCCGAGCGAGAAAACGCCGCAAAGGAAGATCCTTCGGCGCCCAATGATCCGCGGACAGTCGGGAAAGAGACCGACGACAATGTCGAGAGAAACGGCAGGGTTTTGGTCATCGTCGATGCGATTGCAGAAGAAAGCAACACCGAGGTCCAGGCCGTTAAATCCCGCGACGAGGATCCGCTGCACGTTGAAAACGAGAAAGAGTTTGCTCTGCTGATCTCCGCTCAGCCCGTCGACGAAGAATGGAAATGCGACTATTGCGACAGGATATGCGGAAACAGAGAACTCCTACGCAAGCATCAAGTCGTTcacagcaaagagttcaaATCAAACGTGAAAATAGGAAGTGCTGCAACAGAGACTGCCCGGGCAACGAAGACCGGAGTTCATCTTTCATCTGGAGAGAATTTTGAGAGAAAAATATTCGTCCGAACGGACGTTACACGCCGCGGCGATTCGCCCCAAGCTGATACTGTGGACATGAAATTGAAGGACAACAGTTTGGCGATGATTTGCGAAGAGTCTGAGAACTCGAACCCATCTTCGATCTGCAGTGGAGAGAAAGGTTCCGCCTATGCAACGATAGAGATCACTCGCAGGTACCAAGTATCCGCTTATGATGGATCCGGCGAGGGAATTTCAGGGGCGACAAATAAACCCTTAGACTTGTCACATTTTGGAAAATTATCGAGTGTAAAAATGTCCGAATCTCTACTCCTACTGACGATATTGAATTCTAATTTCAGATTCACCCAGCTCCCATTGTCCGAGGATTATTATCGAATGCTAATGCTATCAAAGCTCGATCTGGTGAAGACAAAGCCGGCGAAAAGTGGGGATGAACTTGGAATCTCTGACCAGACAACCGACAGTGCGAACGGTCCTATCAAGGAAGAATTTCAGGACGAGGACGGCGACGGAGAGGCCGACGAAGAGGAGGAGGAGGACGACGAGGACAAACCGTTGGCCTACTACTGCAAGACCTGCGGAGTGTTTTTCAAGACCAAAACCTTGCTGAATAATCACGAGATAGAGCACAAAGGGAAGAGAAAGAACACGTGCAACCAGTGTGGCCGTGTGTTTCGCACCTACGTAAATCTCCGGAAACACATGAAAAAACACGCGGGTAATAAACGAAAGAACGTCGGCAGGCCGATGaaaatgaaggacgaaaaaggtgacgccgaatttctctgcgaaacttgcaacaaggttttccgtcacaaaagcaactaccagaaacacctgcttcggcacacggccggcgatctcacctgcaatcactgccccaagaagttcagactcttccgcgacctgacgcgacacgaaaagacgcacttctatcccagctatatgtgcaaggactgcgactatgagacgacggtactcgccgctcttagcatccacatgctcaggcacaccaacaaggccgatctacccttcaagtgcaacgagtgcgacaagagatttagaaaggcaatagaactccaggaacattacaatattcattcgggggacaagcctttcatttgcacaacttgcgtcagtgctttccacctgagaaggcagctatccgctcattgcagacggatgcatcctgaaatgaaggcgaataaagtgaccagcaccgcgtgcgatatttgcggaagggtactcgcgaccaagagatcgttgtttcgtcacaaggagagtcacaatccgacgaaattatacctgtgcgattattgcgggaaaagtctcagcagcgccgaacaccttaagaaacatcggcgcatacacacgggagagaagccttatgtttgtgatatatgcggcaagggattcacggactcggaaaatcttcgcatgcacaggagaattcatacgggggaaaaaccttacaagtgcgaacagtgccccaaggctttttcacagaggtccaccctcaccatacataggcgaggtcacacgggcgagagaccatacatatgccaaatttgtcatcgcggattctcgtgccagggcaatcttaccgcccatcaaaaatctacctgcgtttga
Protein Sequence: MLVFMPAVKFDNKTAAKDEEKGGKFTAEVCGALISRLLKGDREEVLQLICDFCDKKFPNNSSLASHRRSHKPNYIPENSNQPSLYECDFCGIKIRLKNVFAEHRRLHTGKKTYRCELCEQFFATHQRLYYHKVREHVRETPFCCKICPKKFKLKQHLNVHMKIHNKVYVCDVCGLAMATLCNLEQHRKRHNKEYHLFCHLCSKGFYNKSSLRQHLPIHSGEKPFKCGVCKSSFTTRGYLKLHSLLHEETEKKHRTEGTGTEKLKDPLTASNRNSKTGKRKVSASKSRSRIILDRKNSEKKSRIDMIPSGPIECQICKKVFKKTKYLRSASLLSFMNRPNLQTISSGRAKLRLTSEVTPDFTKPERDEPSDENCQFTQFTPENSIVQEYCIDLPLRQDEAEAEEEEEEEVEAEAKAEAEADADADAEIEIEVEIEAETKVKREADDFALENGDEIKERKYGRKRRSKCAERRSSSYPAQSFYECDLCGKRIRNRILFAKHRQNHDRKPDVNRCQDCDKEFSDDEKFHFFAGFGSNRNGGDSFLRAARRIRSAGPFKCIICNCGFKSSPSLKQHVSKVHGAALPQKFKCHHCDFETDWKGNLRGHMRLHVYELPGGRKKRACNLCERTFSNYQNLLNHRKTHKPVRISPDSWEPPTFECDYCGLRLEKRKQFSKHRRLHVRSLRMACPVCHKWFRSKKAEEKPRRCSERENAAKEDPSAPNDPRTVGKETDDNVERNGRVLVIVDAIAEESNTEVQAVKSRDEDPLHVENEKEFALLISAQPVDEEWKCDYCDRICGNRELLRKHQVVHSKEFKSNVKIGSAATETARATKTGVHLSSGENFERKIFVRTDVTRRGDSPQADTVDMKLKDNSLAMICEESENSNPSSICSGEKGSAYATIEITRRYQVSAYDGSGEGISGATNKPLDLSHFGKLSSVKMSESLLLLTILNSNFRFTQLPLSEDYYRMLMLSKLDLVKTKPAKSGDELGISDQTTDSANGPIKEEFQDEDGDGEADEEEEEDDEDKPLAYYCKTCGVFFKTKTLLNNHEIEHKGKRKNTCNQCGRVFRTYVNLRKHMKKHAGNKRKNVGRPMKMKDEKGDAEFLCETCNKVFRHKSNYQKHLLRHTAGDLTCNHCPKKFRLFRDLTRHEKTHFYPSYMCKDCDYETTVLAALSIHMLRHTNKADLPFKCNECDKRFRKAIELQEHYNIHSGDKPFICTTCVSAFHLRRQLSAHCRRMHPEMKANKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDYCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRIHTGEKPYKCEQCPKAFSQRSTLTIHRRGHTGERPYICQICHRGFSCQGNLTAHQKSTCV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -