Rchl006773.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- -
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000020.1:2299960-2301891[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.4e-07 0.00017 22.2 0.0 2 41 20 60 19 63 0.87 2 3 8.6 4.2e+03 -1.5 0.1 14 23 142 151 139 152 0.79 3 3 2.6 1.2e+03 0.2 0.1 11 26 375 389 373 389 0.92
Sequence Information
- Coding Sequence
- ATGCCAAGAAAATATAATAAACAAGTGACCAACATCTGCACGCGGGGACAGTGGTCAGAAGCAGATCTCAAAGAAGCTGTCAGAAGATTAGATGCTGGCGAAATACGTGTCAATGAAGCTTCTAGGTATTACAATATACCTAAACGGACGCTCTGCCGAAGAAGAAAATCTCAAAATTTGGAAAAACGGTCATTAGGGCCACCAGCGTGCTTGGGATTTGAAAATGAAAAACACCTTGTTGCACATATACAAAGGCTCGAAAAATGTGGCTTCGCGCCCGATCGGCAAGCTGTGCGCTCTTTGGCGTTTCAGTTCGCCGAGAAACTTGGTATTAAACACAGGTTTAATAGAAAGGCACAGTGTGCAGGATACGATTGGCTGCTGTCATTTTTAGAAAGAAACAGAGAACTCACGATAAGACAGTCAGAAGGTTTATCAGTGGCACGTGCGCAGGGATTCTGCAGAGAAGAAATCCAGCAAttttttgacttgctacttaaaatttacaccgagcacgactttttcaataagccagagaatatatataatatggacgaatccggcttacaactcaacaacaaaccaggaaaagtggtcgcaactaaaggcaccaaggatgttcacgtcgttacatctgcagaaaaaggagaaaatgttagtgttattgcgtgttgtaatgctgagggtgtattcctccctccagtccttataatgaaaggaaaacgacagaaagcagaattttcggatggactaccgcccggttctaaaatatatatgaacgaaaagtcatcgtacgtcaactcggcattatttttaacatggttaaaggaacatttcgtgcccagaaaatctcccggaaaagttcttttgatactagacggacacacgtcccattccaccgccttagacatgctcgaatttgcagacgccaatgacataatactattctgtttaccTAGTCACACCACCCAAGCCCTACAGCCGCTGGACAGAGCGTTTTTTAAGCCCTTGAAGGATTATTTCAGAAAAGCTACCCAAAACTGGATGCTACATAACGCCCAACGAAAAATCACTAGATTACAAGCAGGACAGCTCATCGGACAGGCTTGGATAAAGGCAACCTCTGTGCAGACAGGGATTTCCGGTTTCAAGGCAGCGGGAATATATCCCTACGATCCGCAAGCGATACCTGAGCACTTTTTCGCCATTTCAGATACCTCACAAAGTGCCAATGAACTAGTCAGACAGAACTTGAAACCTACGGAACTTGAACAAACAGACCCTGTAGAATCCGTTTCTGGACCTTCCACCGTTCATAACTCTCGGGGCGCAGGTAGAAAATCATCGATGACTGTTGAACCTGAAATAGACATAGTATCACCTACCAAACAGTTAATGAAAATCCGACCATTACCAAGAATTCCGAAACCATTGAATAAAAGACGTAAGCAGTCTGCTGAAATATTGACAACACCTGAGAGAATTCAAGAAAAACGATCGAAGCTAGCTGAGAACCTCGATCAAAATTCAACGAAACCAGCCCCCAAAGAAAAAAAGGTTGACAAATTAGAAGTAAAAAATAATCGAAATACGCCGAAAAAGAACGCGGGGAAAGAAAATGCACTGCCTAAGATAAAACCAAAAAAAGAAAACACCTCAGCCAAGGGAAAGTCTTACAAAAGAAAGAATCAAAAGACAACGAAATCTTCTACAGATGAAAGCGATTTGGAAACATCTTCTCATTCTATAAGCGACTATGAAGATTATTGCGTAGAATGTTTGGAAAAGTATACCGATACGAAACAGAAGGTGGATTGGGTACAGTGTCTCAAATGTGAAGAATGGATGCACGAAACGTGCACTATTTATGAAGCTAAGTGCAATGCCTGTGGACGTCAGGAAAAACGTGCCAAAGTTGTCAAGAAGCATTAA
- Protein Sequence
- MPRKYNKQVTNICTRGQWSEADLKEAVRRLDAGEIRVNEASRYYNIPKRTLCRRRKSQNLEKRSLGPPACLGFENEKHLVAHIQRLEKCGFAPDRQAVRSLAFQFAEKLGIKHRFNRKAQCAGYDWLLSFLERNRELTIRQSEGLSVARAQGFCREEIQQFFDLLLKIYTEHDFFNKPENIYNMDESGLQLNNKPGKVVATKGTKDVHVVTSAEKGENVSVIACCNAEGVFLPPVLIMKGKRQKAEFSDGLPPGSKIYMNEKSSYVNSALFLTWLKEHFVPRKSPGKVLLILDGHTSHSTALDMLEFADANDIILFCLPSHTTQALQPLDRAFFKPLKDYFRKATQNWMLHNAQRKITRLQAGQLIGQAWIKATSVQTGISGFKAAGIYPYDPQAIPEHFFAISDTSQSANELVRQNLKPTELEQTDPVESVSGPSTVHNSRGAGRKSSMTVEPEIDIVSPTKQLMKIRPLPRIPKPLNKRRKQSAEILTTPERIQEKRSKLAENLDQNSTKPAPKEKKVDKLEVKNNRNTPKKNAGKENALPKIKPKKENTSAKGKSYKRKNQKTTKSSTDESDLETSSHSISDYEDYCVECLEKYTDTKQKVDWVQCLKCEEWMHETCTIYEAKCNACGRQEKRAKVVKKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01413062;
- 90% Identity
- iTF_01413062;
- 80% Identity
- -