Rchl033569.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- clz9
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000925.1:69040-70851[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-13 3.4e-10 40.4 0.0 2 39 16 53 15 58 0.91 2 2 7.6 3.7e+03 -1.3 0.2 14 24 512 523 509 524 0.80
Sequence Information
- Coding Sequence
- ATGGTGCGGCAATATGTACGGAAAACTGAGAGAAGCACGTGGGAACCTGCTGCTTTAAACAGAGCGGTAACGGAAGTTTCAGAAGGCCGAATGTCTTTGAGAACAGCAGCTAGCGAATTTGGAATTCCGAAATCCACGTTGAGCGACCGTATAAGAAGTGGAAGTTTTAAGGAGCCCCTTACCGGCAGAAAACCCGTTTTAACATACGAAATAGAGAAGCAATTATCAGATTATGCTATCAAAATGAGTGATTGCTTTTATGGATTAACGCCGATAGATTTACGAAAACTTGCTTTTCAGTTCGCCGAACTAAAAAAGATTCCCCATACTTATAATCGCGAGACTATGACGGCAGGAAAAGATTGGTTAAAAGGATTTTTGACTCGATCGCCAAATCTCAGCATACGCAAACCTGAGGCTACAAGCATAAATAGGGCAAAAGGTTTCAACAAAGAGGAAGTACAGTTGTTCTTCGACAACCTGGAGAAAATTCTGGTTGAAGATCATATCCCTCCTTCGAGAATATATAATGTCGACGAAACAGGCATTTCTACGGTGCAAACTCCCGGTAAAATAATAAGCCCGAAGGGACAGAAGCAGGTCGGAAAAATTGTCAGTGGCGAGAGGGGAGTTACTACTACCGTAATTGCTTGCCTCAGTGCCATCGGATCTTACATACCACCTATGTTTGTTTTCAAAAGGAAGAATCGAAATGATTTACTTATGAATGGAGCGCCACCCTGCTCAATATACGCAGTGACCGATTCCGGCTGGAGTAATGAGATAGTTTTCATAGATTGGTTGAAACATTTCATTTCGATTAGTGGAGCATCGACAACTACGAAGACACTGCTGATTCTAGACAACCATGGCAGCCACAGCACATTACAGGCTTGGAATCTGTGCAGAGATAATGGCGTGATAATGCTTTCGCTTCCTCCACATTCATCTCACAGGATGCAACCCTTAGATCTAACGATATTTGGACCGTTGAAGAAAGCCTACAACTCCGAATGTGACCAGCAGATGAAGCTCACATGTAAAGCTATTACACAGTACCAGGTCGCAGAAATATTAAATAGGGCTTATCAGAGGATAGTCAGTCTGGAGAAAGCTGAGAATGGTTTCCGAGCTGCCGGGATTGTACCCTTTAATCGAAATATTTTTCCGGATGAAGATTTCATGCCTAGTTTTGTTTTTGGGACAACTCGAACAAGCAATGCAAATACCTCAACCGCTGTATCAGGCGTAGAATCCGTTATTACCACCAGCACTACATCGAGATCTCCAGACGAACCTGTGATTGAGAAGTTGTTGGCTTTACCGTTTGAAAAAGCTGCTAAGGCTAGTGGCAGTGGCATCAATAAACGGAAGGGACACTCGGAAATTTTAACGTCATCACCTAAGAAAGTCCAATTGGAAGAAAGAGAAGTGAAGCGAGACAAGAAGAACGAAGAATTACGAAAGAGGAGCGCAGCAATAAAGAGGATAAACGAAGAGGCAAAGAACAGAAACGTATCAATCAAGGCGAGAAGCAAGCAATCAATGTCAACGTGCAAGCCTGCACAGAAACGGCCACCGCGGCTGACTACAAGAAAGCAAAAAGCAACAGCAGGTCTGCAATTGAAATCGTCGCAAGATGAAAATATGAATCGGTGGAATTGCATTACTTGTAATGAATTATTTGTTCATCCTCCAAAAGAGGACTGGATTCAGTGTGGTACTTGCGAGGAATGGTGCCACGAACGATGCGCGGGAAGAGACGCCGGGCCCAGTACTTTCAAATGCTTTGAATGTAAAGAGAGTAACTAA
- Protein Sequence
- MVRQYVRKTERSTWEPAALNRAVTEVSEGRMSLRTAASEFGIPKSTLSDRIRSGSFKEPLTGRKPVLTYEIEKQLSDYAIKMSDCFYGLTPIDLRKLAFQFAELKKIPHTYNRETMTAGKDWLKGFLTRSPNLSIRKPEATSINRAKGFNKEEVQLFFDNLEKILVEDHIPPSRIYNVDETGISTVQTPGKIISPKGQKQVGKIVSGERGVTTTVIACLSAIGSYIPPMFVFKRKNRNDLLMNGAPPCSIYAVTDSGWSNEIVFIDWLKHFISISGASTTTKTLLILDNHGSHSTLQAWNLCRDNGVIMLSLPPHSSHRMQPLDLTIFGPLKKAYNSECDQQMKLTCKAITQYQVAEILNRAYQRIVSLEKAENGFRAAGIVPFNRNIFPDEDFMPSFVFGTTRTSNANTSTAVSGVESVITTSTTSRSPDEPVIEKLLALPFEKAAKASGSGINKRKGHSEILTSSPKKVQLEEREVKRDKKNEELRKRSAAIKRINEEAKNRNVSIKARSKQSMSTCKPAQKRPPRLTTRKQKATAGLQLKSSQDENMNRWNCITCNELFVHPPKEDWIQCGTCEEWCHERCAGRDAGPSTFKCFECKESN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -