Rfor028441.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720231.1:3783169-3794779[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.7 3.8e+02 2.7 0.2 2 17 65 80 64 81 0.78 2 10 2.3 1.8e+02 3.7 0.9 1 23 214 237 214 237 0.87 3 10 0.8 65 5.1 0.2 2 23 245 266 244 266 0.95 4 10 0.03 2.4 9.6 4.3 1 23 300 322 300 322 0.98 5 10 0.0058 0.47 11.9 0.2 2 23 327 349 326 349 0.97 6 10 9.2e-06 0.00075 20.7 0.1 1 23 356 379 356 379 0.96 7 10 8.2e-05 0.0067 17.7 6.6 2 23 385 406 385 406 0.97 8 10 0.00066 0.054 14.8 0.1 2 23 417 439 416 439 0.91 9 10 1.8e-05 0.0014 19.8 0.6 1 23 445 468 445 468 0.94 10 10 0.46 38 5.9 0.2 3 12 479 488 478 491 0.86
Sequence Information
- Coding Sequence
- ATGTCTCAGTTTCAAACTGAATGTGTTTCAAACTATGTTAGAGACGAAGAATTCTTCAAGAAATCACAATCAAGGAACGTTTGCGTTTCTTGTTTGAACCAAAATGTTCCATTCGTGAGTTTGTCAAATTGTAAACACGCAagttttttcgaatattttttgaaagtaaGGGTACAAGTGAAAGAGCTGATGGTGTGCACTCACTGCCACCACGTGTTGAAGAAGATTGAGTCGTTCAGGCGACAGAATGAAGCAAGCTTGGCATACCTCAATGACCAGTCTTTCAACTTCCATTCAGCATACAAGAGTCATCTTCAGACATCCCCCATAAAGACGACCGACAGCTCGGAGCCAATCGACGAAGAGGCGCCCCACGAGGACTTCGCCTTTGAAGACTTCGTCACGGAAGTCAAGATAGAACATGACTCGGACGTTGATGTGCCTCTGTCGGAGATAAAGAAGGAAATTCCTTcTGTATCAGGCCATATTAAAAAGGAGAAAACGACGAccaagataaaaaagaaaagtcaTATCGAAGCGAAATACCACGGCAAGATCCGCATTGTACAACTGAGTGAGGAGGAGATGCAGAATGAGAGAGAAAGGGACAGGAACAAGGCGTCGTATCTGAAGCTGCCGTACCGATGTGATGATTGTATTATGGGGTTTGACCATGAATTGACTTTGAAGGACCACAATGTGAAGAGGCATGATAAGaaaaacaaaaatttggagTGCAATATATGTAAATCTGTTTTGGGATCGGTCAATTCATACAGGGAGCATGTCAAGAGACATTACAAGAGATTTGAATGCTGTGCGTGTGGGAAGCGCAATAATAATGTGTATTCTGTGATCACACATTACAATGATCAGCATGGAGGTATAGACGCCAGCTATACGTGTCAGGATTGTGGATTTACCACCGCATCTCACCGCAGCTACCGCTACCACAGAGACAAGCACAAGCCGAAGCAGCAATGCAAACTATGCAGCAGCTCCTTTGTCAACGGGGCCGGGCTTCGAGTACATATGTACACAGTCCACAAGCAATCCAGCCGCGTCTTCTCTTGCACTACATGCAACAAAGTGTACAACTCCAGCTCAGGCCTGGTCGCACATATGGCTTCAGCGCACACCAACAACAGCGCCTACTGCACCCTTTGCAAGAAGCATTTTAATACAGAAAGTAATTTGACGCACCATCTCAATACACATTCAGCCCACGTTGGAGACTCTAACAAAGTGACATGCGACGAGTGCGGCGGTCGGTTCCGAACCAAAACAGCTCTGATGGAGCACATCGACTTCATACATCTAAGGAAGAACAAGTTCGAGTGCGCGAAATGTtccaagGTGTTCGTGAACAAAGCAGCCCTGAAGAAGCACACCAATTTCGTGCACGAGAAGATCCGGCCTCCGCGCAATAAGATCTGCGACCACTGCGGGAGAGGGTTCACGGTGAGGGTTACTTCCAGGCCAGGGTTGTTGATGCAGATTTTTACTGTATCTGTGGATGCTGTTAATTAG
- Protein Sequence
- MSQFQTECVSNYVRDEEFFKKSQSRNVCVSCLNQNVPFVSLSNCKHASFFEYFLKVRVQVKELMVCTHCHHVLKKIESFRRQNEASLAYLNDQSFNFHSAYKSHLQTSPIKTTDSSEPIDEEAPHEDFAFEDFVTEVKIEHDSDVDVPLSEIKKEIPSVSGHIKKEKTTTKIKKKSHIEAKYHGKIRIVQLSEEEMQNERERDRNKASYLKLPYRCDDCIMGFDHELTLKDHNVKRHDKKNKNLECNICKSVLGSVNSYREHVKRHYKRFECCACGKRNNNVYSVITHYNDQHGGIDASYTCQDCGFTTASHRSYRYHRDKHKPKQQCKLCSSSFVNGAGLRVHMYTVHKQSSRVFSCTTCNKVYNSSSGLVAHMASAHTNNSAYCTLCKKHFNTESNLTHHLNTHSAHVGDSNKVTCDECGGRFRTKTALMEHIDFIHLRKNKFECAKCSKVFVNKAALKKHTNFVHEKIRPPRNKICDHCGRGFTVRVTSRPGLLMQIFTVSVDAVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -