Rfor029069.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720232.1:2593937-2639030[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.025 2 9.9 0.0 1 23 521 544 521 544 0.95 2 14 8.6 7e+02 1.9 1.5 1 21 662 682 662 683 0.88 3 14 0.046 3.7 9.1 3.8 2 23 742 763 741 763 0.95 4 14 9.4e-05 0.0076 17.5 0.2 2 23 806 829 805 829 0.97 5 14 0.089 7.3 8.1 0.2 1 23 835 857 835 857 0.93 6 14 0.0028 0.23 12.9 3.3 1 23 863 885 863 885 0.98 7 14 0.18 15 7.2 0.0 2 19 896 913 895 916 0.90 8 14 0.12 10 7.7 0.1 1 23 993 1015 993 1015 0.97 9 14 3.3 2.7e+02 3.2 7.4 1 23 1022 1044 1022 1044 0.95 10 14 0.0018 0.14 13.5 1.8 1 23 1085 1108 1085 1108 0.95 11 14 0.0003 0.024 15.9 0.8 1 23 1115 1138 1115 1138 0.98 12 14 0.28 22 6.6 0.2 2 23 1159 1181 1158 1181 0.95 13 14 0.0015 0.12 13.7 0.3 1 23 1195 1217 1195 1217 0.97 14 14 0.0038 0.31 12.4 0.8 2 23 1243 1265 1242 1265 0.94
Sequence Information
- Coding Sequence
- ATGGCGGACCTGCAACCAATACCACTGATACTGTGCATGGAAAACGCTGCTGGCGAGGAAATATCGCTGAGGATCGAACCGGAGGATGACTTCCAGACGTTTCTCGATAAGGCCAAATCTGTGCTAGGATTCGACGTGGACATAAACTCTATAACGCGCAACCAACCCGTATCTCTAGATGACAATATCTACCAATTTCTCATTAACTCCGAACAAACTTACGAAACAGACTTAAACCCACCAAACTACGACCAAATCCTAGACCAGGCTGACGGGAATGATGACCTAGTATACGTTCTAGATGATGGCACTCAAATCAGAGCATCCCAAATACATTTCGATAATGAAGACCCACCAGTAGACCTTACCGCTGAGAAAATACCTTTCGTCAAATACGCTGATGTAGAAAACGATGATATAGACGTAGAAATCACTGGAGATGTTGATGTTAAGAACTATAATATCGTAGAAAGTCCCGTATCGAGATGGTCGAGCAAAAATTCAAGCCCAAAATTCAGTTTTATCAACAGTCTACCTTTCAAATTAGTTTGTAACAACACTTCTGGATTTGAAGCTCAATTTACTAAATATCTAGAAAGTTCTAATACAGCTCCGAAAACTTACGCGACTTTGAACCCTGTGGTTAATAGAAATAAGTCCCCAAGAAGTCTCATCAACGATAATTATAAGAATTACGATGATAATTTTAATAGAACTGAAAATTTTACGGCTTTCACTCGAGAGGAAATACTTAATATGTTCAAAGATTCTCCAGTTGCGTCGTTGCCTTATAAAAATCCAGTTTTAGAGAAAAGGAAGCATTCGCGCAAAAGTGATCCTTCAAGGCTACATAAAACATGGACTTCCAAGTCAAATTACGATGACGGTGTTTTGATAGTTGATAGTGAAAGCaaagattgttttatttgtgGTAAATACGTGGAGAATAATTTAGAGAAATTGTATCTATTTGACAATGAAGATCAAAAGATACATAGATCGTCTCCGCAGAAGAAAATGTCGAGGCAACTAAAGATTATTTGCGAAAATTGCTTAGGTGAGAATTTCAGACCTTGTAGAATGAAGGGTCCCAATCAATGCTTGAATGCTGACGAATATTTGGTCATCCGTAACAACCAACAGTATATATTCCAGAAAACAACGAACTTCTCTTTCAAAAAAGGTTTCTCAGCAGAGGTAATAGATGAAACAAAGAAGAAGGGGAAAGAAGAATTCGTAAAAGTAGAAATAGGGTCGGATGGGGAAATAATAACTAAACCAGTAGACAATGATCCCGATTCTCCCAATGATGTGATTCTGATCAAAGATGACCCCAGTTCGAGTGAACCAGAGATCATAGAGCCGCCGGAAATAGACGATGTCATAGACAATTTGGATGACGCCGACGAGGAGGTGAAGGAGTTTTTGGGGAAATACCAAAGAGATAATAATGAAGCGACTGAGTTGAAATGTCGGTTTTGCGACACGGTGTTTCCGGCGCTACCGGAAGTCATGGAGCATTGTGAGATCCATAAGCATGATATTGAAGACGGCGTTGTGTTCCCATGTCCCCTATGCAATTACGgTTACGCAAATGTGAAATGGTTGAAAGGGCATTTGAAGGCGGCCCACGAGAAGAAAACTGAAAGTAGCCAAAGCAAAGAAATCACCGTCGATATTGAGAAAGGAGAAGAAGTAAAGTCGCCAAGGCCTGGCTCCCCCATAGCAAAGCGTACTCGCAGCTCCATCAGAAAGTCGGATGAGGAGCAGAAAGattcacCAAAAGTGGAAGAAGCAAAGGAGGAAACCAAAAACGATACTGCTGAAAAGAGGGAGACAACAATAGAAGTGGAAGTGAAACAAGAGAACATAGTAAGCAGTGATGACGAAATCTGGATCGTACATACTGGAGAGGATCAACTTGAGAATATACTCCAGCCTAAACAGGGTGAAGAAGAAAAACCAGTAACTCACAAACGAACTCACACGTGTATAAATTGCAGTCAGATCTTCACTTCTGCCGAAGCGTTCGCCTCACACAAGTGTCGCAAGCGGGGCAGGAAACAGAAGCCTATGGacgacatcatcatcaagaaaGATGACGTTATGAAGAGACCTCAAGGCAGACCCAGGCTCGTCGAAAGAAATCCTAACAACGATCTTCTTGTTGAGAGACCACGCAAGAAAAGGAGCAAAGTGCCGACTTCAGATCCTCAAATCGTGACTTGTCATAATTGCAACGAATCCTTCACGTCCAAAGTGCGATTGAAGTTCCATATgcaGTTCCACGAAACAACAACGATGCTAACGCCAGAAGGTCGCTACTCCTGCATTGAATGCGATGGCGCAACCTTCGACACGGAGAGCGAGCTGTTTGACCACGTGCATTTCAAACACGACAAGCAAAAACGCTGGCAGTGCCCCGTAGCTGATTGTGGGAAGACCTTTTATCTTCGGGCCACGCTCACGAAACACAGTCGCAGTCACACAGACACGCGTAGATACGTATGCGTGACATGTGGCAAGAGATTCCTGGACAAGCAGACTTTGGATGAACACGGAGTTACGCATTTACAGATCAAGCCCTTCCAATGCCACATCTGCCTGAAGCAGCTAACTCGTCGGTCTCGCCTCCGCATGCACCTGCGGGCTCACGAAGAAGCCTTAACACCCAAACTGGTGTTAGTATGCGGCGTTTGCAGCAGAGCTTTCAGGGACCAAGAAGACGCACAGGAACACGCAACGAAATCTACAGAATGTATAGAAGAATTCGCCAGTGAACTGAAGGAGGAAGCAGAAGAAGCGGTACTATCACCCACTAGTGGACTAGTGCGGCATACAGTGCAAGTAGTCGAATCCCCGAAATTTTCAAAACCAATCCAGCGGCAAGTCGACAACGCCACAGCAGAACCACTGttatccaagatggcggacgaaGCTCGCACCATTATACGCGTGGTGGAAATTGAGAAGGCATTCCGATGCGAGTATTGTGAGgaTGTGTTCTACTTGGAAGAGGGTCTGAACAACCACCGTGCGATCCACAAGGGGGTCAAGAACCCCTTTACTTGCCACATTTGTAAGGTCACCTTCGCGACGTACTCTAGGTGTACTACCCACAAGACAACGCACGGTTTCTACAAGCGCCCCCTAGCGGACGCCAAGAAGCAAGCCACGTCCACCGTGAAGCCGGAAGCCGGCCCTGCCGCCACGGGGATATTGGGCTATGGGGGGTTTCCGGTCGTCAAGCACTTTCTGTGTGAGGACTGCGGCCGTTCCTATCTCCACTGGACATACTTACAAGTACACCGGCGTATGAAACATGCCAACGACAGCTTTCTGTACAAATGTAATCAATGCGAGCTTACGTTCCCGAACAGTTGGAGTCTAGCTTACCACAGGAAGAAGATTCATTGCAAGTCGGGAATCGAAGTCAGCGGTCCTTCCAAACCTAGCAAGGAGGATTACAGGATTCCTTGCCGCGACTGTGAGGAGTTGTTGCCAAATAAAACTGCGCTTTATAAGCATAGGAAGAAAGAACACAGTGACATGGCGTTGAGCATGACCAGTAAACCCGGGCCATTCTTCTGCGGTTCCTGTGGTAAGCAATTTCCCACCCGGGCCGGACTCGATGCGCACACCAAGTCTCATGTACGCTGCGATTGCGACGATCCTGAATCAACAGTGATGCGCAATCACAGATCGCTGCCGGGCGTATTGGCTTGGTCGTGCGCTCGATGTCCGAAACGTTTCCGAGCTCGCAATGATTTGAAGACTCATGTTAGACTGAAGCATCCGGCTTACTTGGCTGTTATCGAGatTGCTGGGCTGAATCCGTCTCCCGAAGAAGTGATGGAAGTGTTGCGCGTGAACAACATACAGCAGGAACGCATCATAGAGATCACTAAGATGTCTTTTGCTAAGGGTACCTCAAGCGTAATACCAACCTGTGCCAGAGCGCTGTCCCTACTGAGTAACGTACCGCAACAGTCTGTGGACTATCAGACTCACACGGAAccagAATATCAACATTTCAACATTTCGCGGTCGCCGCACAGGCCCAAGATACTTCAGCGTGGTGACGATAACCAAGACAACCAATTTGCGATGCCTTTGAACGTGCCGGCAGAcATCCCGCTGCTAGTAGAAGGTGAGCGGCTGCTACGGCTGCAACTAGACGACGGCATATTACAATAA
- Protein Sequence
- MADLQPIPLILCMENAAGEEISLRIEPEDDFQTFLDKAKSVLGFDVDINSITRNQPVSLDDNIYQFLINSEQTYETDLNPPNYDQILDQADGNDDLVYVLDDGTQIRASQIHFDNEDPPVDLTAEKIPFVKYADVENDDIDVEITGDVDVKNYNIVESPVSRWSSKNSSPKFSFINSLPFKLVCNNTSGFEAQFTKYLESSNTAPKTYATLNPVVNRNKSPRSLINDNYKNYDDNFNRTENFTAFTREEILNMFKDSPVASLPYKNPVLEKRKHSRKSDPSRLHKTWTSKSNYDDGVLIVDSESKDCFICGKYVENNLEKLYLFDNEDQKIHRSSPQKKMSRQLKIICENCLGENFRPCRMKGPNQCLNADEYLVIRNNQQYIFQKTTNFSFKKGFSAEVIDETKKKGKEEFVKVEIGSDGEIITKPVDNDPDSPNDVILIKDDPSSSEPEIIEPPEIDDVIDNLDDADEEVKEFLGKYQRDNNEATELKCRFCDTVFPALPEVMEHCEIHKHDIEDGVVFPCPLCNYGYANVKWLKGHLKAAHEKKTESSQSKEITVDIEKGEEVKSPRPGSPIAKRTRSSIRKSDEEQKDSPKVEEAKEETKNDTAEKRETTIEVEVKQENIVSSDDEIWIVHTGEDQLENILQPKQGEEEKPVTHKRTHTCINCSQIFTSAEAFASHKCRKRGRKQKPMDDIIIKKDDVMKRPQGRPRLVERNPNNDLLVERPRKKRSKVPTSDPQIVTCHNCNESFTSKVRLKFHMQFHETTTMLTPEGRYSCIECDGATFDTESELFDHVHFKHDKQKRWQCPVADCGKTFYLRATLTKHSRSHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEALTPKLVLVCGVCSRAFRDQEDAQEHATKSTECIEEFASELKEEAEEAVLSPTSGLVRHTVQVVESPKFSKPIQRQVDNATAEPLLSKMADEARTIIRVVEIEKAFRCEYCEDVFYLEEGLNNHRAIHKGVKNPFTCHICKVTFATYSRCTTHKTTHGFYKRPLADAKKQATSTVKPEAGPAATGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANDSFLYKCNQCELTFPNSWSLAYHRKKIHCKSGIEVSGPSKPSKEDYRIPCRDCEELLPNKTALYKHRKKEHSDMALSMTSKPGPFFCGSCGKQFPTRAGLDAHTKSHVRCDCDDPESTVMRNHRSLPGVLAWSCARCPKRFRARNDLKTHVRLKHPAYLAVIEIAGLNPSPEEVMEVLRVNNIQQERIIEITKMSFAKGTSSVIPTCARALSLLSNVPQQSVDYQTHTEPEYQHFNISRSPHRPKILQRGDDNQDNQFAMPLNVPADIPLLVEGERLLRLQLDDGILQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00013586;
- 90% Identity
- -
- 80% Identity
- -