Basic Information

Insect: Rhodophaea formosa
Gene Symbol: -
Assembly: GCA_963082605.1
Location: OY720233.1:6133614-6134585[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.011 0.93 11.0 0.5 1 23 55 77 55 77 0.96

2 8 0.0025 0.2 13.0 2.4 1 23 103 125 103 125 0.98

3 8 1.4e-05 0.0011 20.1 0.2 1 23 133 155 133 155 0.98

4 8 5.3e-06 0.00043 21.4 0.3 3 23 163 183 161 183 0.96

5 8 2.1e-05 0.0017 19.6 4.4 1 23 189 211 189 211 0.99

6 8 3.3 2.7e+02 3.2 8.8 1 23 217 239 217 239 0.97

7 8 0.15 12 7.4 2.9 2 23 249 270 248 270 0.95

8 8 4.3e-06 0.00035 21.7 3.2 1 23 282 305 282 305 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.011	0.93	11.0	0.5	1	23	55	77	55	77	0.96
2	8	0.0025	0.2	13.0	2.4	1	23	103	125	103	125	0.98
3	8	1.4e-05	0.0011	20.1	0.2	1	23	133	155	133	155	0.98
4	8	5.3e-06	0.00043	21.4	0.3	3	23	163	183	161	183	0.96
5	8	2.1e-05	0.0017	19.6	4.4	1	23	189	211	189	211	0.99
6	8	3.3	2.7e+02	3.2	8.8	1	23	217	239	217	239	0.97
7	8	0.15	12	7.4	2.9	2	23	249	270	248	270	0.95
8	8	4.3e-06	0.00035	21.7	3.2	1	23	282	305	282	305	0.97

Sequence Information

Coding Sequence: ATGGAACCCAAAACTGGCGTGGGAATCCAAGATCACTGGATGAAGAGTATGATGGAACCAGCTGGCAGCGACAAAAACGTAAAAAGAGAGAAGATGGGTGAGACATACAACCCTGGTGAGAGCGTCACGTACGAAATGAAACAACAACAGAACGACAATAGATACCGGTGCGACGTATGCGACTTGACGTTTGAAGGTATGGAGTTTTTGATTCTTCATAAAAAGTTCCATGGGAATGATAAAGATGCTCCTATTATGGAACCAGAGCCGGTTGTTGAGAAAACTGGTCCGAAGAAGCGTCGCAAATTCAAATGCGACCAATGCGACGTAAAAGTAAACTCTCAGTATCATCTAGACATACACCGCAGTAAGCATGAAGGCGTACAGTCTAAGAAGTACATCTGTGAGGTATGTGACCGCAGCTTTGTTGCTGCACAGTTCCTGAAATCACACATGCAAACTCATTCGTCAACGAGCACGATCAATTGTGAAATTTGCCAAAAAAGCTTCACGGGACAAGCGTATCTCAAACTCCACATGCAGTTGCATAACGACATCAAGAAATTCAAATGTTCAAAATGTGAGGAAATGTTCCCAACGAAGAATTGCCTGAAAATCCACATGAAGAAGCATACAAAAGTGAAAAACTTTAAATGTGATTGCTGTCATAAACTTTTCGTTTCGAAGATAACGATGGAGAAGCATAGACACTCTCACGAAGGGCAGCCAGTAGATTGTCTCGTGAAGTGTACTCATTGTGATCGTACGATGCATTCATCGTTGGTCAGAACACACATGGCTAGAGCGCATCCTCCAACTGTCGATGACGATGTGAAGAGGCCACACAAATGCTCGACTTGCGGCAAGAGTTTCATTGTGAAAATCAACCTGAATCTGCATATACGTGTTTGTCACCCTGATTTGGCTGAGCCGGAAGACGAAGATGAGGAGGTTATGACCGACAACTCTTAG
Protein Sequence: MEPKTGVGIQDHWMKSMMEPAGSDKNVKREKMGETYNPGESVTYEMKQQQNDNRYRCDVCDLTFEGMEFLILHKKFHGNDKDAPIMEPEPVVEKTGPKKRRKFKCDQCDVKVNSQYHLDIHRSKHEGVQSKKYICEVCDRSFVAAQFLKSHMQTHSSTSTINCEICQKSFTGQAYLKLHMQLHNDIKKFKCSKCEEMFPTKNCLKIHMKKHTKVKNFKCDCCHKLFVSKITMEKHRHSHEGQPVDCLVKCTHCDRTMHSSLVRTHMARAHPPTVDDDVKRPHKCSTCGKSFIVKINLNLHIRVCHPDLAEPEDEDEEVMTDNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00779714;
90% Identity: iTF_01220931; iTF_00012367; iTF_00013459; iTF_00640824; iTF_00146756; iTF_00720704; iTF_00736875; iTF_00008291; iTF_00073170;
80% Identity: -