Rfor027846.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720230.1:4675613-4680336[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.1 5.8e+02 2.2 0.2 1 15 76 90 76 92 0.83 2 17 1.1 87 4.7 3.3 1 22 209 230 209 234 0.90 3 17 0.00078 0.063 14.6 0.8 2 23 245 266 244 266 0.97 4 17 0.18 15 7.2 1.2 2 23 374 396 373 396 0.95 5 17 0.012 1 10.8 4.7 1 23 402 425 402 425 0.97 6 17 0.0018 0.15 13.4 0.0 1 21 429 449 429 450 0.95 7 17 0.0088 0.72 11.3 0.7 1 23 458 481 458 481 0.97 8 17 0.0083 0.67 11.4 1.6 1 23 486 509 486 509 0.96 9 17 0.0002 0.016 16.5 0.3 2 23 522 543 521 543 0.97 10 17 0.00019 0.015 16.6 0.8 1 23 550 572 550 572 0.98 11 17 0.00078 0.063 14.6 1.6 1 23 608 630 608 630 0.97 12 17 5.8 4.7e+02 2.4 0.2 2 19 635 651 634 653 0.70 13 17 0.00065 0.053 14.9 0.6 2 23 672 694 671 694 0.96 14 17 0.00011 0.0088 17.3 4.0 1 23 700 722 700 722 0.99 15 17 4.6e-05 0.0038 18.5 2.2 2 23 729 750 729 750 0.97 16 17 0.0051 0.41 12.1 0.8 1 23 756 779 756 779 0.92 17 17 0.087 7.1 8.2 1.2 2 23 785 807 784 807 0.96
Sequence Information
- Coding Sequence
- ATGGCTCACTTCCAGAATGAAGGCAACATGGCATGCATTAAACAGAAGCTCTGGAACATGTACCAGGCGGAAAGATTCTGCTCAGTCTGCCTGGAAAGCACGGACAAGCTTTGGCCATTAGACACAGAGTTTGATATTACAGTAAATGAACGGACACATAAGAAGAAAGTGAAAGAATTGGTCTACTATGTCTTTGTAGattggaAAGAAGTACTAGCCAGCCTCTACATCTGCAGTTACTGCACAGAGAGAAGCATTCAGTCTTATCTGTTCATCTACAATGCAAGACAACTGTCCAAAATCATGACAGATTACGTCGAAGATTTATCAACCAAAGTTGATGATGTTAAGTTTCAATTACAAACGGATTGCGATTACAACAACTCTAATGTTGTAATAGTTCTTGATGATAAGgaagatataaataattacatagatattGGAACGACTACTGAAATTACTGCAAAAGAATCTTCCATTTTACTACTAGAAGATATTGTCAAAGAAAATTCTGTAGATATAACGACGACGGTtgataataaagaaaatgtaaatattaaacaagAACCAGATATACATAAACCTACGAAGAGGAAAAGGAAAAAGTTTTCAAAGAATGCTACATACAGATGCTTGAAATGCAAAAGAGTTTTGTCTACATTAAATGCTTGGACAGAACACGAAAAGGTCTGCAAACATCACAGAAGAATAGGAAATATAGTATTACCCTTACAGTGTAAAGTTTGTTCTGAAACACTGAAAACTCAACGATTATTAACAATTCATTATAAGGTTCATCAAATGGAAAGATGTAAGATATGTCACTTTATAATGCCAGAGGGGGCATTGATTGATCATTTGAAGCTAAACCACGCAGACGACATCCATATTTGTGAATTTTGCGAACATATTTCCTATTCTGCTATGGCATCCGAAATTCACATGAAAAAGAAGCATGGCGACCCCCAATGTATCATGTGTTTGAAGAATTTCAAAGCGGCAGATTTACAGAATCATAAATGCAAATTTAGATGTTTGTATTGTAAACAGATGCCGTGTATTCATCACAAATATCTAGTCCATTACAGACAGCAGGTATTGAATGAATCTACTAAGATTCAATGCTTAGACTGTGATTACGTATGTCATAAGCGCGAAGCGTTGTTAGGGCATGTCAATCGGGAGCATTTAGACCACCATCCTTTCACTTGCGCCCATTGCTCTCAACAATTCTACTCAAAACTGACTTTAAGGAATCATTTAAATCGTTTTCACAGAGACAATTTTGTATGCGAGTTTTGTGACGAAGATTTTAAAGTGCAGGCTACTTTGGAAGAGCATATAAAGATATGTAAATGGATTAAAAGGCATTTTAGATGCGATTTGTGTGCCTCTTCTTTTGATACTTCGGAAGAATTGTTAAATCATAAGAATTCTAAACACAACGAAGAAACTTTCCCTTGTAATTTATGTAATAGGAAATTCTTTACAGTCCTAAAGTTAAAAGAACATATGTTTAGAATACACAGTGGACTGCAAATTAAAAGGAAGAGGAGTAATTTAGAATGTACAGTATGTGACATCAAATTTGATGACCGAAAAGAATTTTCGAAACATATAGCTACTCATGGTCCATGTTCTAAAAAATTCCCGTGTCGAACGTGTAATAAAGTTTTTGACAACATAAAGAAGCTTCTCGCACATACTCGGATGCACGCTGATGACGTCATCAAATGCACTGATTGTAATAAACTTATAACTACAGCCTATTTTCCCAAGCATATGATATATTGTGGAGCGAACAGGAACGAAGAGAATAGCTTCTCTTGTGAAACTTGTGGAAAAACTTTCCAAACGGAAGCGGTTTTGAAAATGCATAGACACGTCCACTTGGATCCCATAACCTGCcaaatttgtgggaaactactCAAGCCACTATACATGAAGAGGCATTTAAAATGTACACATGGGCAAATGAAAGATATGAAACCGAAGAAGAATCTAAAATTGATCAAATGCGACTGGTGTGGTCATATGGTGACGAGAAAGGGCGAATTAGAATCCCACGTGAACAGATTCCATTTGAAAATCAAACCATATGAATGTAATACTTGTAAAAAGACGTTTTGCGGTAAAGAGCGTCTCAAAGAACATATACAAACCCATTCTACAGATCATACTAGATATTGCACGGTCTGTGGCAAGAAATTTGCCAACCAAGTGTGTTTGAAAATGCACTTAAGGTTACATTCGGGATTAACTCCGTACGCTTGCGATATTTGTGGACAAAAGTTTAGGTCTTCGAGCATTATGAAcacacataaaattaaaaagcataCGGAAAAAAGTATACAGTGTCCCCTATGcgataatatgttttatttggCGCGGGAAATGAGACACCACTTCAAGAAGGTTCATTGGAAGAATAAGGGGCAAAAGTTCGACCCGAGAGATATGAAGGAATTGAGTAAAGAGTTCTACCATCTGTTTGAAGATCGTAGGATACCGAAAGTTACTGCGAATGATGCTGTTTTCTCATGA
- Protein Sequence
- MAHFQNEGNMACIKQKLWNMYQAERFCSVCLESTDKLWPLDTEFDITVNERTHKKKVKELVYYVFVDWKEVLASLYICSYCTERSIQSYLFIYNARQLSKIMTDYVEDLSTKVDDVKFQLQTDCDYNNSNVVIVLDDKEDINNYIDIGTTTEITAKESSILLLEDIVKENSVDITTTVDNKENVNIKQEPDIHKPTKRKRKKFSKNATYRCLKCKRVLSTLNAWTEHEKVCKHHRRIGNIVLPLQCKVCSETLKTQRLLTIHYKVHQMERCKICHFIMPEGALIDHLKLNHADDIHICEFCEHISYSAMASEIHMKKKHGDPQCIMCLKNFKAADLQNHKCKFRCLYCKQMPCIHHKYLVHYRQQVLNESTKIQCLDCDYVCHKREALLGHVNREHLDHHPFTCAHCSQQFYSKLTLRNHLNRFHRDNFVCEFCDEDFKVQATLEEHIKICKWIKRHFRCDLCASSFDTSEELLNHKNSKHNEETFPCNLCNRKFFTVLKLKEHMFRIHSGLQIKRKRSNLECTVCDIKFDDRKEFSKHIATHGPCSKKFPCRTCNKVFDNIKKLLAHTRMHADDVIKCTDCNKLITTAYFPKHMIYCGANRNEENSFSCETCGKTFQTEAVLKMHRHVHLDPITCQICGKLLKPLYMKRHLKCTHGQMKDMKPKKNLKLIKCDWCGHMVTRKGELESHVNRFHLKIKPYECNTCKKTFCGKERLKEHIQTHSTDHTRYCTVCGKKFANQVCLKMHLRLHSGLTPYACDICGQKFRSSSIMNTHKIKKHTEKSIQCPLCDNMFYLAREMRHHFKKVHWKNKGQKFDPRDMKELSKEFYHLFEDRRIPKVTANDAVFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012336;
- 90% Identity
- -
- 80% Identity
- -