Basic Information

Insect: Rhodophaea formosa
Gene Symbol: erm
Assembly: GCA_963082605.1
Location: OY720228.1:400907-402037[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 7.6e-06 0.00062 21.0 0.4 1 20 148 167 148 170 0.92

2 6 4e-07 3.2e-05 25.0 1.6 1 23 176 198 176 198 0.97

3 6 1.3e-06 0.00011 23.3 2.1 1 23 204 226 204 226 0.98

4 6 1.6e-05 0.0013 19.9 3.2 1 23 232 254 232 254 0.98

5 6 0.00079 0.065 14.6 6.0 1 23 260 282 260 282 0.99

6 6 2.1e-05 0.0017 19.6 4.5 1 23 288 311 288 311 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	7.6e-06	0.00062	21.0	0.4	1	20	148	167	148	170	0.92
2	6	4e-07	3.2e-05	25.0	1.6	1	23	176	198	176	198	0.97
3	6	1.3e-06	0.00011	23.3	2.1	1	23	204	226	204	226	0.98
4	6	1.6e-05	0.0013	19.9	3.2	1	23	232	254	232	254	0.98
5	6	0.00079	0.065	14.6	6.0	1	23	260	282	260	282	0.99
6	6	2.1e-05	0.0017	19.6	4.5	1	23	288	311	288	311	0.98

Sequence Information

Coding Sequence: ATGCAGCCGTTCCAGACGAGTGGTCGGTCGGACGGGCCGCGCGAGTCGTCGCCCGACCGCGCTAGATCCCCAGACACCCCCGCCGCCCCCGCTGCCCCCGTCCTCAACTTCTCCATCGCCCGGCTCATGGAGCCCGACCGGAAGAAGTCCGTGTCCCCTGACCCTCCGCAACCTCCAGGGTTCCTCTCTTACGGCGCTCAGTTACTAGACTCCGCGTTCAAGCAATACATCCCAGTGGCTAGAAGACAATTCTCTCACTATCCCCTGCTGTATTACGGACCAGACTTAGTATCGTTAACGTATGCTCATCAATTGCATTTACCACGACCACCAGCACCAACTTCGCCCGTGCAAAGGCCGCCGAGCCCTAGAGCTCCGGCTGCAGACCACGCTGTATCATCGACGACAGGGCCAACTCCATCACCAGCGAAGAACAAGAGCTTCGCTTGTGGAGATTGCGGGAAGGTCTTCAATGctcattataatttaacaaGGCATATGCCAGTCCATACCGGAGCGAGACCGTTCGTCTGCAAAATCTGCGGAAAAGGCTTCAGACAAGCTTCAACATTATGTAGGCATAAGATCATCCACACATCAGAGAAGCCACATAAATGCCTGACTTGCGGGAAAGCCTTCAACCGCTCGTCTACGTTAAACACCCACGCCAGGATCCACGCTGGATACAAACCCTTCGTCTGCGAGTTCTGCGGTAAAGGTTTCCACCAGAAAGGCAATTACAAGAACCACAGACTAACCCACAGTGGAGAGAAAGCCTACAAGTGCAATATTTGCAATAAGGCATTTCACCAGATCTACAACCTAACTTTCCACATGCACACCCACAATGAGAGAAAACCGTTTACTTGTAACATATGCGCGAAAGGCTTCTGCAGAAATTTTGACTTAAAGAAACACACGAGGAAGTTGCATTTAGGAGCTGGAGGTTCTAATAATGGAGACTCGTCTTTGGATACACAGGATGAGTCGACACAAGAGGCCACGCCGAGCCCAGTAGAGGAAACGAGTAGGGCAGCAGCTTTTCGTCCATTCTTAGGCTCTTCCTATCCTCGGCTTCTGGACCCATCACGCATGACGACCCCAAACACGTTCTTCTCAAAGTTGTTGTGA
Protein Sequence: MQPFQTSGRSDGPRESSPDRARSPDTPAAPAAPVLNFSIARLMEPDRKKSVSPDPPQPPGFLSYGAQLLDSAFKQYIPVARRQFSHYPLLYYGPDLVSLTYAHQLHLPRPPAPTSPVQRPPSPRAPAADHAVSSTTGPTPSPAKNKSFACGDCGKVFNAHYNLTRHMPVHTGARPFVCKICGKGFRQASTLCRHKIIHTSEKPHKCLTCGKAFNRSSTLNTHARIHAGYKPFVCEFCGKGFHQKGNYKNHRLTHSGEKAYKCNICNKAFHQIYNLTFHMHTHNERKPFTCNICAKGFCRNFDLKKHTRKLHLGAGGSNNGDSSLDTQDESTQEATPSPVEETSRAAAFRPFLGSSYPRLLDPSRMTTPNTFFSKLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00785466;
90% Identity: iTF_00273889;
80% Identity: -