Rfor014094.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720215.1:4239465-4252686[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.9 2.4e+02 3.4 0.1 3 23 124 144 122 144 0.95 2 16 0.053 4.3 8.9 0.1 2 23 148 170 147 170 0.94 3 16 0.76 62 5.2 1.4 2 23 409 431 408 431 0.95 4 16 0.0084 0.68 11.4 0.6 1 21 439 459 439 460 0.95 5 16 0.0022 0.18 13.2 0.7 2 23 470 491 469 491 0.95 6 16 2.9 2.4e+02 3.4 6.2 1 20 539 558 539 562 0.89 7 16 3.3 2.7e+02 3.2 0.9 3 15 641 653 639 662 0.79 8 16 3.9e-05 0.0032 18.7 2.2 1 23 696 718 696 718 0.97 9 16 7.3e-05 0.0059 17.9 0.8 1 23 725 747 725 747 0.98 10 16 0.00011 0.0088 17.3 2.3 1 23 752 774 752 774 0.96 11 16 0.0018 0.15 13.4 3.3 1 23 780 802 780 802 0.98 12 16 2.2e-06 0.00018 22.6 1.4 1 23 808 830 808 830 0.98 13 16 9.3e-05 0.0076 17.5 1.2 2 23 837 858 837 858 0.98 14 16 0.00037 0.03 15.6 0.8 2 23 866 888 865 888 0.97 15 16 7.2e-06 0.00059 21.0 1.1 1 23 893 915 893 915 0.97 16 16 0.00037 0.03 15.6 3.8 1 23 921 944 921 944 0.98
Sequence Information
- Coding Sequence
- aTGACCTCCGACGATTCTGACGATGAGCCGCTGTCAATATTAGCGGCATCAAAGAAGACTATCCCAAAATGTGGCACTGAACAGTCTCCGGTCAATTCAGATGAGAAAGATGCTGAATATGTACCAGAgaggaaaaagaagaagagtAAAAAGTCAATatccaagcctaaaatatccctaacaataaagattaaagGGAGAGATAGAGTGTTGCAAGTGCCGAAAGTTATAGAACGTCCAACAGATGTCTGGCTGTACATAAAAGATTTGAATCCCGCAGGGCCTTTTAGCTGTTTGTTGTGCTCTGAATGGTTTATAAATAGGCCTAAGATGATCATCCACTATGTGATAAACCATAAGAAAGATTTCTGTGGTATTTGCAGATACTTTGTGCCTGATCGAGAAGCATGGTTAGAGCACCAAAAGTTCCACATCCCATGGCCTTGCTCCCAATGTGTGGAGAACTTCCAAACAGAAGTAGAACTGCGGCAGCATCTCAGCAGTGCACACAACTTAGTCCACTGTCGGCTGTGCCACTTCAGAATGCCTGATGATGACCAGTATACCACCCACCTCTTCCAAAAACATAATGTGACAAATGTAACATGTAAAGATGAGGAGCTATTTTGGGAGTTGGAGTATGAAGGAGGGACTAAATTTCTTTGCTTACTCTGCTCAAAGTCCAATAATCCATCACCAAATTTCTTTAGCCACTATATGGGCTTCCACCACTTTACTTTGAAATGCTTTACAAAGATCATCTCCGGCCGAGATCCCCCATTTGCTGTATTCGGAGCTCAGGTGAGCTCTCAGTTCATTCAAAATCAATTGAGAAATCAAGACAGGTTTGGTTATGTTGAGTTGGATAATAACCAAGGTGTCCCTTCGACAATAGAAAGCAGTGATGCTCAAGCTTTGTTGAATGCTCTGATACCAGAAAGCATCATAAAACAAGAACCAGGGAGTGACATAGAGGAAAAATACGATAGAGCCTCTGAGGAGACAAACAAAGCCACCGAGGAAATAGATGAAGAAAGAAATGACTTATTGAAGTCATATAAAGGTGATGAAGATTTTGATATCACACTTGTAGAACTAATTATAATGGAGAAGAGTTACGTAGAGTATCTCAATCATACTTTACTAGACATCAATGCTAATGTTGTGCCAGAAGTTTCTGATATTGAATACGAGTCGATAAAGGCAGAATTTCCACGAGAAGTCTCTTGCGGATTATGcgacacaaaaaataatacaccTCACACATTTACTGCACATATGACCAAAATGCATTTGTTGAAGTCCTTACCAGTGTATTGCTGTAGAGTGTGTGCAACTACCTTTGAGAATAAGAATGAGCTGGAAACGCATATAAATGAGGAGCTAGGTGAATTTGATGACTTGTGGATATGTCAGTTTTGTGACAAGGAGTTTGATAATAGGGAATCCACTAGGCGGCATTTGAATGAGCATTTTGAGGAGCTGGAGTATGACAATTGCTTCAGTCCGCATATAGGCTTCAAGTGCAGGTATTGCTCGATGCTGTTTTGGAATGAGCCAGATAGAGAGTCACATCAAGTGCGCATCCACTATGAGGCCAATATGGAGGATTATTACAAGTGTCACACTTGTTCTGAACTATTTAGTGACAAGgtATTCTTCGTCCACCACTTCTTTGAAAAACACCAAAGCACCGAATCTGAACCTCCCACTCACCTCCTTAAATGCAGTAAATGTTGCTTGGTGCTCCTGAATGTAGACGAGGCCCGGACTCACTTCAATGAATATCATCCGGAAGCTAGGAAGATATTCTGCTCTCTCGACGCTTGCTTATATAAGCCACTTAGCCATATGAAGTCATTCAGGTTGCACATGAAGTTGGTTCACGCGCCCGGCAACCGAGTAGACCGCAAGATCAACTGTAACGTTTGCAGTCGCCAGTTCTCGAGCGCTCGTGCGTGCAGCACGCACAGTGCGCAGGCGCATGGCCCTGGAAAGTTCAAATGCAAGTTGTGCCGGGATGTCATGCACACTCTGGATGAGAGAAAACTCCACTACCTCCTTCAGCATCCCGGCCGGCACCCGTTCGAGTGCAAAGAATGCGGCAAGTCGTTCCAGTACAAATCGTCCCTGTACATGCACAAACAGGAACACGTGCCTAACAAACAGAGCTACACGTGTGACGAGTGCGGCAAAGTGTTTTTGAAAAAGGACTCTTTTCGCGAACACCAGCAAATCCACGAAGGGCCCCGCCACGCCTGCTCGTACTGCCCGATGCGTTTCGTCCAACGTTCCAACATGCTGCGCCATGAACGTAGACATACTGGGGAGCGGCCGTATGCTTGTTCGCATTGCCCACGTACCTTTGCGGATAAGGGCGCTTGCACTTCACATACTAGAACCCATTTAAAAGAAACTTCGTACGCCTGTCTGTACTGCGGACAAACTTTCGTGCAGAAATCAAAGTTAACCTACCATATAAGAAAACATACTGGAGAAAATCTGGAGACGTGTCCAATCTGCGGCAAGCTGTTCACGAGCGGCTGCTCCCTGCGCGAGCACATGAAGATCCACAACTCCAAGAAAGGATCCATCAAGTGCCCGCTTTGTGACAAACGCTATCAAGACGAGCGTTACATGCTGCGTCATCTACGGACCAACCACACGCGCGCACAGTACTTCTGTCCCATATGTGGCAAGGCTTTCGCCACTTGCACAAGTCTGAAGTACCACGTCATCACGCATAGTGCTGTCAACACCTTCAAGTGCAAAATCTGCCCAAAATCCTGCGCCGTGAAGAAAACAATGATCAAGCATCTTCGGAAACGACACAGCCTACGAGAATCAGAGGTCAGCTTCAAGCAGTTCTACGAACGCGTGGACCCACGGGATTGCAGGCTAGGGCTCGACGAGGACACCATGACCAAGATATTCGGACCCCCCAAGAAAAACTTCGAGATCGTGATCCCTGACATGTCAACGACTAAAGTTGAAGGTGAAATAAATGAAGGGGAAACTTCAGAGAAATTACATGAGGTCTTGATTAAGAATGAGATGCCgagtgatgatgaagaagaagtgGAGCCGACAGATTTTGTCCGAGTGAAGATTGAGCCAATGTGTGAGGAATCTGAAGAAAATGAGGATTAG
- Protein Sequence
- MTSDDSDDEPLSILAASKKTIPKCGTEQSPVNSDEKDAEYVPERKKKKSKKSISKPKISLTIKIKGRDRVLQVPKVIERPTDVWLYIKDLNPAGPFSCLLCSEWFINRPKMIIHYVINHKKDFCGICRYFVPDREAWLEHQKFHIPWPCSQCVENFQTEVELRQHLSSAHNLVHCRLCHFRMPDDDQYTTHLFQKHNVTNVTCKDEELFWELEYEGGTKFLCLLCSKSNNPSPNFFSHYMGFHHFTLKCFTKIISGRDPPFAVFGAQVSSQFIQNQLRNQDRFGYVELDNNQGVPSTIESSDAQALLNALIPESIIKQEPGSDIEEKYDRASEETNKATEEIDEERNDLLKSYKGDEDFDITLVELIIMEKSYVEYLNHTLLDINANVVPEVSDIEYESIKAEFPREVSCGLCDTKNNTPHTFTAHMTKMHLLKSLPVYCCRVCATTFENKNELETHINEELGEFDDLWICQFCDKEFDNRESTRRHLNEHFEELEYDNCFSPHIGFKCRYCSMLFWNEPDRESHQVRIHYEANMEDYYKCHTCSELFSDKVFFVHHFFEKHQSTESEPPTHLLKCSKCCLVLLNVDEARTHFNEYHPEARKIFCSLDACLYKPLSHMKSFRLHMKLVHAPGNRVDRKINCNVCSRQFSSARACSTHSAQAHGPGKFKCKLCRDVMHTLDERKLHYLLQHPGRHPFECKECGKSFQYKSSLYMHKQEHVPNKQSYTCDECGKVFLKKDSFREHQQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACSHCPRTFADKGACTSHTRTHLKETSYACLYCGQTFVQKSKLTYHIRKHTGENLETCPICGKLFTSGCSLREHMKIHNSKKGSIKCPLCDKRYQDERYMLRHLRTNHTRAQYFCPICGKAFATCTSLKYHVITHSAVNTFKCKICPKSCAVKKTMIKHLRKRHSLRESEVSFKQFYERVDPRDCRLGLDEDTMTKIFGPPKKNFEIVIPDMSTTKVEGEINEGETSEKLHEVLIKNEMPSDDEEEVEPTDFVRVKIEPMCEESEENED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012345;
- 90% Identity
- -
- 80% Identity
- -