Rfor028912.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720231.1:10151204-10152733[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00018 0.014 16.6 1.9 1 23 145 168 145 168 0.95 2 10 0.00039 0.031 15.6 3.8 2 23 176 198 175 198 0.94 3 10 0.38 31 6.2 5.4 2 23 206 228 205 228 0.95 4 10 1.1e-05 0.00088 20.5 0.1 2 23 236 258 235 258 0.96 5 10 0.0026 0.21 13.0 7.0 1 23 265 288 265 288 0.96 6 10 0.0018 0.14 13.5 5.8 1 23 294 317 294 317 0.94 7 10 9.2e-05 0.0075 17.5 0.3 2 23 325 346 324 346 0.97 8 10 0.0028 0.23 12.9 2.2 2 23 354 376 353 376 0.96 9 10 0.00011 0.0093 17.2 3.0 2 23 383 405 382 405 0.94 10 10 5.2e-05 0.0043 18.3 3.0 1 23 415 437 415 437 0.97
Sequence Information
- Coding Sequence
- ATGGAAGCCACAGATTACAGAATGGCGGGGATGAACCTCAAGATGGAGGGGATGGACTACAAATTGGAGGGGATGAACCTCAAAATGGAGCTTCCCGCCCTGGCACAGCAGGGGCCCATGTCGCTGCACCATTATCCTCCACCACTGCCCTTAGCGCTACCCCCACATCTACAACCACAAACTACACAAACCGAATTTCCCCCTATACCACAAAATACGACTAAAACCGAGCCTCCTTCCTTACTACCCGAGCCCCCTGCCTTGCCACCAGATCTCCCGTCTATACCACCGCATATTCTATCCGAACCAGAGAAGAAAGTCACCAAATTCATCAGCGTCACCAGCTCCCAATTGACCGACGAACAGCGGCAGATGTACGAGTCAGTACTATCCACGTGGAAGCCAGTACTCTTCCCCAAAACAATCAAACGCTACATCTGTGAGAAATGCAACAAAGAGTTCAAAAACTACCAAAACTTGTACTTGCACACGACGCGCGTGCACTCCACGGAGGACTCGGCAGTCATGTGCGACCGCTGCGACAAGTCCTTCAAAAACAAACACTACCTGTACATGCACAGGATGAACAAACACTATTCCGAATCTGAGAAATGCTACTGTCAATTCTGCTTGCAAGAGTTTCGCACGCGCCGCGCCCTGCACATGCATGTGAAGAAAATTCATCCGAACACGTTGCCGGAGATAAAATGCCCAGAGTGCGGGAAGGAGTTCAACGTTCCGTACAAACTGAGATATCACATCGAGCGCGTACACCGCGCGGACAAAGAGAAATACAAATGCCATCTCTGTCAGAAACTGTATAAAAGCCATCTCAACTTAAACAGGCATATGCAGTTTCAGCACTCGCACGTTGAGAGGCATCCTTGCGTCTTCTGCGACATGACCTTCAAATCCCGCCACCACATGAAGCGTCACATCCTCAACATCCACCCGCCTTTGGAGTCCAAGGTGACGTGTCCCGAATGTCTAAAAGAGTTCAAAAATGACCAATATCTCAAGGAACATATGCAGATTCACTCAGCGGCCGATACGAAGGTGAAATGCGAGCTGTGTGACAAGTTTTTCCATTCAGCCATACGTTTGAAAAAGCATAAAAAGATCGTGCATCCCTCGAAGCCGAAGATACGTTGCGAAAAGTGCGATAAAGAGTTTGCACACGCGCACTATCTGCGTCGCCACAACAACTCTGTTCACGTGGACGTCGATGAAAAGAACTACGAACATGAGTGTGGACTGTGCGGGAAGAAGTTCAAACTGCAACGATATTTGAACAATCACTTGCAAAGACACGAACAGCAGCATCTGAAGAAGATATCGCAGATGGTGAAGACCGTCATGCGCGAGGACGGCACGGAGGCGCCCGTGAAGCGGCGCGGGCGGCCGAGGAAAAAGGCGGGAGACACCAAAGTCACGAAGGAAATCGAGTTTATAAAGTGCGAGCCGGTGTCGAGTTCTGAATCAGATTCTGATGACTCCAGCGATGACGATTCTGATGACTCTTCTGAGTAG
- Protein Sequence
- MEATDYRMAGMNLKMEGMDYKLEGMNLKMELPALAQQGPMSLHHYPPPLPLALPPHLQPQTTQTEFPPIPQNTTKTEPPSLLPEPPALPPDLPSIPPHILSEPEKKVTKFISVTSSQLTDEQRQMYESVLSTWKPVLFPKTIKRYICEKCNKEFKNYQNLYLHTTRVHSTEDSAVMCDRCDKSFKNKHYLYMHRMNKHYSESEKCYCQFCLQEFRTRRALHMHVKKIHPNTLPEIKCPECGKEFNVPYKLRYHIERVHRADKEKYKCHLCQKLYKSHLNLNRHMQFQHSHVERHPCVFCDMTFKSRHHMKRHILNIHPPLESKVTCPECLKEFKNDQYLKEHMQIHSAADTKVKCELCDKFFHSAIRLKKHKKIVHPSKPKIRCEKCDKEFAHAHYLRRHNNSVHVDVDEKNYEHECGLCGKKFKLQRYLNNHLQRHEQQHLKKISQMVKTVMREDGTEAPVKRRGRPRKKAGDTKVTKEIEFIKCEPVSSSESDSDDSSDDDSDDSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00640761;
- 90% Identity
- iTF_00640761;
- 80% Identity
- -