Basic Information

Insect: Rhodophaea formosa
Gene Symbol: -
Assembly: GCA_963082605.1
Location: OY720232.1:9886209-9891018[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.89 73 5.0 0.9 2 23 254 276 253 276 0.94

2 14 0.043 3.5 9.1 0.4 1 23 282 304 282 304 0.98

3 14 0.033 2.7 9.5 2.5 3 23 312 332 310 332 0.92

4 14 0.0044 0.36 12.3 0.0 3 20 340 357 339 359 0.94

5 14 3 2.4e+02 3.3 0.0 2 23 390 412 389 412 0.91

6 14 1.2 97 4.6 0.3 2 23 419 440 418 440 0.94

7 14 0.021 1.7 10.1 1.7 1 23 446 468 446 468 0.91

8 14 0.1 8.2 8.0 0.0 2 20 475 493 474 495 0.93

9 14 0.0012 0.099 14.0 1.2 2 23 511 532 510 532 0.96

10 14 0.0021 0.17 13.3 0.7 1 23 539 561 539 561 0.98

11 14 4.4e-05 0.0036 18.6 1.1 3 23 568 588 567 588 0.98

12 14 1.7e-06 0.00014 23.0 2.0 1 23 594 616 594 616 0.97

13 14 2.3e-05 0.0019 19.4 0.3 1 23 622 644 622 644 0.94

14 14 0.00015 0.012 16.9 3.4 1 23 650 673 650 673 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.89	73	5.0	0.9	2	23	254	276	253	276	0.94
2	14	0.043	3.5	9.1	0.4	1	23	282	304	282	304	0.98
3	14	0.033	2.7	9.5	2.5	3	23	312	332	310	332	0.92
4	14	0.0044	0.36	12.3	0.0	3	20	340	357	339	359	0.94
5	14	3	2.4e+02	3.3	0.0	2	23	390	412	389	412	0.91
6	14	1.2	97	4.6	0.3	2	23	419	440	418	440	0.94
7	14	0.021	1.7	10.1	1.7	1	23	446	468	446	468	0.91
8	14	0.1	8.2	8.0	0.0	2	20	475	493	474	495	0.93
9	14	0.0012	0.099	14.0	1.2	2	23	511	532	510	532	0.96
10	14	0.0021	0.17	13.3	0.7	1	23	539	561	539	561	0.98
11	14	4.4e-05	0.0036	18.6	1.1	3	23	568	588	567	588	0.98
12	14	1.7e-06	0.00014	23.0	2.0	1	23	594	616	594	616	0.97
13	14	2.3e-05	0.0019	19.4	0.3	1	23	622	644	622	644	0.94
14	14	0.00015	0.012	16.9	3.4	1	23	650	673	650	673	0.98

Sequence Information

Coding Sequence: ATGTCGGACACAGAAGAATCGGCTGAAAAATGCGAAGAACCAACTGAAAGTCGTAAAGAAAAAGCTGAAAAAAGTACAGACACTAGTGACATTGAAAACACATGTTATCCCCGGAGCCACTGTCGCTTTTGTGGCGAAGAAATGGACTGCCGCGAGCTCCTAGACTTGTCTTCAGAGGATATCGTTACAAAGTATCGAAAACTGCTCTTGTATATTAGGTTAGAGGTTGATTTCTCAGATACTAATAAGCTTCCTAAACATGCTTGCTCTGATTGTCACAATGCTTGTTTGGAGATATATAGATTCTTCGTTACTGTGCGAAAAGCTCAGGAAGACCTCGATGTGCTGTATGATAATGTAACTAATCCTCTAGAGTTGGATAATACAGACACAAATGATTCAACCAAAGAGGCGCCGCCTATGGAGGTTGACGTTATTCAGAATATGGTTGTCGGTAAAGGTGTGGTAAAAACTGATGTAGAAGATGGTTATGACGATACTCAGGAAGTGCGTAGTATATCTGATACTGAACCTCAGGATCCAGATGGTCAAAACAAAGACGTCACAACAAATGATATGGCTTCAACTTTAGAAATTTTGTTGGAACAACCAAACAAAGAAGCAGAATCGATGTCAAGCAAAATCCTTTCTAAAAAAAcgacatataaaattaaaaggtcAACAGCTAAAAAAAGTCCGAAAAAGAAATCTGAAGAAATTGTTAAAACAGTAACATTTTCGTGGGCGAGTTACCTATGGTCCTGTGATCACTGTAAGGCCGAGTCTGACACTATGGAAGAGTTGCGGCTGCACAGTAGATATACACACAACTGCTGTTATGGTTTTAGTTGTGTGGATTGTAATGATGAGTTTAACACTTTTAACGCTTTTGTAGAGCATGTCAGGACTCATAGAGAGTATTTGAGATTGTTTTGTCAATACTGCAACAAGAAGTTCACGAACAAGGTGGAGTGCGCGCTGCACGCCCTGACGCACTGGTCCAACGGGCAGAAGATCTGTGAGCTTTGCGGCGAGATCTTCCCTGACCAGGAGGCCCTGAAGACCCATAAAAGCGCGTACAGGCCGAAACCCCTGACGCACAACACCAGACGCAAGAAGCCGAAACTAGTCGACCAAGATCAAGGTTCTTGGAAGGACTATGTGTGGACTTGTCAGGATTGCTTTCAGGTGATGCCCGACATAGTGGTGCTGCGACGGCACGTGCGCGAGGTCCACTCTAAGTGCTTCGCCGTCAAGTGCGCGGACTGCCTGCGGGTGCACAGGAGTTACGGCGATCTGGTGaaacatatatacggacatagaCCCAACTTGAaaCATTACTGCCACTACTGCAACCAGTACTTCGTAAACCCAGAAGACCTATACCCCCACATCGACGAACATTATACCAACCCCGAGAAACCCTGCTATGGCTGCGGAGAGCTCTTCACAACCGATGAGGTCCTTCGGAAGCATATCCTGGACTTTGACTCGGTCAGACGACCCGGTCCAGCCAAGGAGGACGACCTGATCTGTGACATTTGCAACAAAAAATGTGAAACGGTTGGCAAGCTACGGATACACAGACGAATACACGAATATAAAGAACGGTGCTACGTCTGTGATACATGTGGCAACTCTTACTTCAACTATTGGACGTATCAATCCCATATAAAAATCCATGGGGAACGGTCAGAGATTTGTAAGATTTGCAAAAAAGGTTTTCCGACAAAAGTGAAACTGAAGAACCATGCGAAAACTCATTTGGATGATAGACCGTTCTCGTGTGAGCTTTGTGGCAAGTCGTTTAAGACTAAAAACAAGTTAACGAGGCATAAAATCATACATACTGATGCGAAGCCATACGTGTGTGTTATATGTGATAAAAGTTTTAGACAGAAGAACGGTTTAAAAGTGCATTCGGCCCAGCATACAGGAGTGAGGCCTTTCCAATGCCAGTTTTGTGATAGGACATTCACGAATAACCCAAATAGGGACAAACATATGAAAAGGAGACATGGTGTACcgttgtataaaactaaggtaCCTCCAGAAGAGGTTACAGATACGAAGGCTAAAGAGTGGCTCAGTCAGGTGACAGCGAATCAGAAGAAGAGGAGAGATGCTGTGGAGAGTGTTGAGGGTACGAGGCAGGGAGCTCAAGATGAAATGCAGACAACACAATAG
Protein Sequence: MSDTEESAEKCEEPTESRKEKAEKSTDTSDIENTCYPRSHCRFCGEEMDCRELLDLSSEDIVTKYRKLLLYIRLEVDFSDTNKLPKHACSDCHNACLEIYRFFVTVRKAQEDLDVLYDNVTNPLELDNTDTNDSTKEAPPMEVDVIQNMVVGKGVVKTDVEDGYDDTQEVRSISDTEPQDPDGQNKDVTTNDMASTLEILLEQPNKEAESMSSKILSKKTTYKIKRSTAKKSPKKKSEEIVKTVTFSWASYLWSCDHCKAESDTMEELRLHSRYTHNCCYGFSCVDCNDEFNTFNAFVEHVRTHREYLRLFCQYCNKKFTNKVECALHALTHWSNGQKICELCGEIFPDQEALKTHKSAYRPKPLTHNTRRKKPKLVDQDQGSWKDYVWTCQDCFQVMPDIVVLRRHVREVHSKCFAVKCADCLRVHRSYGDLVKHIYGHRPNLKHYCHYCNQYFVNPEDLYPHIDEHYTNPEKPCYGCGELFTTDEVLRKHILDFDSVRRPGPAKEDDLICDICNKKCETVGKLRIHRRIHEYKERCYVCDTCGNSYFNYWTYQSHIKIHGERSEICKICKKGFPTKVKLKNHAKTHLDDRPFSCELCGKSFKTKNKLTRHKIIHTDAKPYVCVICDKSFRQKNGLKVHSAQHTGVRPFQCQFCDRTFTNNPNRDKHMKRRHGVPLYKTKVPPEEVTDTKAKEWLSQVTANQKKRRDAVESVEGTRQGAQDEMQTTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00640759;
90% Identity: -
80% Identity: -