Basic Information

Insect: Rhodophaea formosa
Gene Symbol: -
Assembly: GCA_963082605.1
Location: OY720229.1:2106959-2126769[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.072 5.8 8.4 0.3 3 23 143 163 141 163 0.95

2 15 0.0028 0.23 12.8 3.2 1 23 341 363 341 363 0.99

3 15 4.3e-05 0.0035 18.6 0.6 1 23 369 392 369 392 0.97

4 15 0.23 19 6.8 7.0 1 23 397 420 397 420 0.94

5 15 0.00045 0.037 15.4 1.0 2 23 598 619 597 619 0.97

6 15 6.8e-05 0.0055 17.9 2.6 1 23 625 647 625 647 0.99

7 15 0.21 17 7.0 8.0 1 23 718 740 718 740 0.97

8 15 2.3 1.9e+02 3.7 0.3 1 23 747 769 747 769 0.90

9 15 0.00062 0.05 14.9 1.5 1 23 775 797 775 797 0.97

10 15 0.0037 0.3 12.5 2.2 1 23 803 825 803 825 0.98

11 15 0.041 3.4 9.2 5.3 1 23 834 856 834 856 0.98

12 15 0.0007 0.057 14.8 0.6 3 23 905 925 904 925 0.97

13 15 0.078 6.4 8.3 5.8 1 23 942 964 942 964 0.95

14 15 3.5e-06 0.00028 22.0 0.7 1 23 970 992 970 992 0.98

15 15 0.00083 0.068 14.5 6.5 1 23 998 1021 998 1021 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.072	5.8	8.4	0.3	3	23	143	163	141	163	0.95
2	15	0.0028	0.23	12.8	3.2	1	23	341	363	341	363	0.99
3	15	4.3e-05	0.0035	18.6	0.6	1	23	369	392	369	392	0.97
4	15	0.23	19	6.8	7.0	1	23	397	420	397	420	0.94
5	15	0.00045	0.037	15.4	1.0	2	23	598	619	597	619	0.97
6	15	6.8e-05	0.0055	17.9	2.6	1	23	625	647	625	647	0.99
7	15	0.21	17	7.0	8.0	1	23	718	740	718	740	0.97
8	15	2.3	1.9e+02	3.7	0.3	1	23	747	769	747	769	0.90
9	15	0.00062	0.05	14.9	1.5	1	23	775	797	775	797	0.97
10	15	0.0037	0.3	12.5	2.2	1	23	803	825	803	825	0.98
11	15	0.041	3.4	9.2	5.3	1	23	834	856	834	856	0.98
12	15	0.0007	0.057	14.8	0.6	3	23	905	925	904	925	0.97
13	15	0.078	6.4	8.3	5.8	1	23	942	964	942	964	0.95
14	15	3.5e-06	0.00028	22.0	0.7	1	23	970	992	970	992	0.98
15	15	0.00083	0.068	14.5	6.5	1	23	998	1021	998	1021	0.98

Sequence Information

Coding Sequence: ATGAATATGAACATGGAAGTGGATCCGTTAAGTACCTACGAGTACCCTTATGACTACAACGCACATCCGAACATTAACCCCTACGCACACCTACACCAAGTAAAACAGGAACAACCGTTGATCGGCCATGAGTTCCTTGGCCATTTCATGGATGTCAGTTATAAAAATAACGATAGACTATATCCTAATATACCTCATTCTTATCAACAATACCAAGAGAGACAATACACAGACCTACACACAGTAGGAAACGAAAATAACGGAAACATAAATAACGAAAACGGAAGTAACGATGCTGTTAATCCAGCGCTCAAAGAAGAGGACATCAAACCGTTAATAGAcccaaagaaaattaaaaaagagaagGGTAGAAAAAGCACCTACTTTTCTGAGAAAATATTAGATAACGATTTTAAGTTTTACGGATGCTCCGTTTGTGATATCAGCTTTTCTGCTTTGCATGAATTAGATCAGCATGTAACCAATCACAAAGATAGAATAACTAGCTACGATTTGAAAATAAAGAATCAAATTAAAAGGAAGAATATGAAAAAGgaacagaaaaagaagaagaaaatgcaCAAGGATGTGAAAATAGAAACTGAATTTGAAATAGAAATTAAACCTGAAGATGGTTACATCGGTAACGAGAAAGCTTCAGAATTTAATGCGaaccaaaatgaaaataatgaaacatcTACAAATGAAAACAATGGAAACATTACTAGTGAAAATAACGGAAATATTACTAAAATGAATACCGAAAATGTTGCAAaagaaaatgtcgaaaatgCTACAAATACAACAAATGAAAATAACAGAAATATTCCAAATGAAAATGAGGGAAAtactacaaaaacaaataatgaaaacacTTCTAATAATAACGAAAAGGTTGCTACGGATAACGGGAATGCTCCTAACATTGATAATGATTCTAAGAAGGATGTgaaagaaaaaattgaaaaggATAAAGCTAAAGAACAGACCGCTGCAGAGAGAGTTAACTTGGAAAAGATATACAAATGCTTCGCGTGCAAGAAACAATTCACTTTAAGTTACTATTTGAAGCTACATGTGCGGTCACATACAgATGAAAAGCCCTATACATGCAGTGTGTGTGGGCAGTCCTTCATTACGGCGAGCAAACTCGGGCGACACAACAAGAGGATGCATCTCTCCGTGCGCTACCAATGTCGGATCTGCTACAGATTCTTCTCCAAatTCGAATGCCTGACCCGGCATTTTGACAAAAAGCATCCGGACGATAAATTGGAAGGTGAACCGTACGACTACAACGCCATCCTACCCTACCTGAAAGAGCTTGAAGAGCAATTGAAGGAGAAAGCTGAAGAATCTAAAAAAGCGAAGACCGAAGACCTATGGGACGGCTGGCCCGCGCCCATAGACAACGGGGAGACCAGCGACAAGACTTTTGAAGTTCTCGTTGAAGAGAAACCTATGGATGGGTTGGTGGATGAGAAACCTTTGGAACTATTGCCTCATTTAACGCAGATCAAGAAAGAGGAGCCGTATCCCGAGTTTGCGACAGTGAAGGACAGTGATAGCCTAAAGAGCGAGAAGGAAGATGAAAAGGATGATTTTAACGACAGCTTCCATGACGACAGCTTTAGAGACGATGACGCTAAAGATGACAGCTTCAAAAATGATGACAATGACGGGAACGCATCTGACGACAACTACTTCCCCTCCGGCACGTGGGTGCCCCCCACCCCCAAAGTGGAGATCGAGGAAAAGCCCAAGAGACGAAAAAAGACGGACCCACCCCTAAAATGCGATATATGCAACAAGAAAATTAGCACCATCACATATATGAGGATACATATGAGAACGCATACTGGGGAGCGACCGTTCAAGTGTTATATATGTGAACGGGGGTTTATAACCTCTAGTAAACTGCATAGACATGTGTTGACTCATGCTGAGGCCTGGGAAGGAAATTTAGgTGGAGAAGCCGGCGTGAAGAATGAAAAGAATGAGAACGAAGCAGatattaaagaagaagaaggtgaaGAGAAGGAAGGGAAGAAAAATGACAAGAAGAAAGACAAAAAAACCCGCATAAAACGCGCAAAGGCAGAGTTTGCAGCCAAATCGAAGGGCGAAGCGAAAATCTCAAGAAGATGGCAGCACACGTGTCAGTACTGCCACAGGAGGTTCCTGCACGCCGAGACGCTGCAGGTCCACAAAAAGAGCCACGAAGGTGAAGAACTAGTGTTCAAATGTCACTACTGTCTGCTGCCTCAGCCGGACGAAGCGACGCTGACTGAACACGAGGCGACTCACACCGGTCCGGCGCCGTACGTGTGCTCGGACTGTGGGAAGAAATACCGGAAACGGGAAGCTATGATATACcacaaaaaacaacataaaCCCGACAAGATGTTTTACTGCGAGGTGTGCCTAAAGGCGTTCAACGCTCAATGCAAGTTACAGCGCCATCTGTTGAGCCATAACGAAAAGAAATTCGTGCTTCGCTATGAATGCCCTGTGTGCGCGCATATGTTCCACACAAAGTACCACATACAAATGCATCTGACGACGCATCAGAAGGAAGGATTGATACAAGAAGAGAACCGCAACGACATCCTAGCCATGGTTCTTCAAAACGCGCGAAAATTTCCCAAACAAACAGACGCGCCCACCACTAACCTAACAGAAATTCTCCCTAACGACGATCGATCTCGAATCTGCAATATTTGCGGAGAAATATTCCAACATTTCTACTATTTAGAAGAGCATTTAAAAAGCCACGGTTCAAAAATTGCCCTCGAAGACATCAACAACGAGGAGGAAAAGAAACATATCTGCAAAGTGTGCAACAAAGGATTCAAACTACACTATTACTTGAAACTACACAGTTTCACGCACACTAAAGAGAAGCCTTTTATATGCCAGCAGTGCGGTAAAGGGTTCATTACGCGCGGTAAGCTGAAAAGGCATCTAGAAACGCACACGGGCATAAAGAAGTATCAATGTCATATTTGCTGTAAATTCTTTACGAGAACTAGTTATTTGAGGATTCATGTTAGGACGATACACGGGACTCAGGATTATAATTTTAGGGTAGGGAAGGAATATGGCAATGGGGAGTCTATggatgtattttaa
Protein Sequence: MNMNMEVDPLSTYEYPYDYNAHPNINPYAHLHQVKQEQPLIGHEFLGHFMDVSYKNNDRLYPNIPHSYQQYQERQYTDLHTVGNENNGNINNENGSNDAVNPALKEEDIKPLIDPKKIKKEKGRKSTYFSEKILDNDFKFYGCSVCDISFSALHELDQHVTNHKDRITSYDLKIKNQIKRKNMKKEQKKKKKMHKDVKIETEFEIEIKPEDGYIGNEKASEFNANQNENNETSTNENNGNITSENNGNITKMNTENVAKENVENATNTTNENNRNIPNENEGNTTKTNNENTSNNNEKVATDNGNAPNIDNDSKKDVKEKIEKDKAKEQTAAERVNLEKIYKCFACKKQFTLSYYLKLHVRSHTDEKPYTCSVCGQSFITASKLGRHNKRMHLSVRYQCRICYRFFSKFECLTRHFDKKHPDDKLEGEPYDYNAILPYLKELEEQLKEKAEESKKAKTEDLWDGWPAPIDNGETSDKTFEVLVEEKPMDGLVDEKPLELLPHLTQIKKEEPYPEFATVKDSDSLKSEKEDEKDDFNDSFHDDSFRDDDAKDDSFKNDDNDGNASDDNYFPSGTWVPPTPKVEIEEKPKRRKKTDPPLKCDICNKKISTITYMRIHMRTHTGERPFKCYICERGFITSSKLHRHVLTHAEAWEGNLGGEAGVKNEKNENEADIKEEEGEEKEGKKNDKKKDKKTRIKRAKAEFAAKSKGEAKISRRWQHTCQYCHRRFLHAETLQVHKKSHEGEELVFKCHYCLLPQPDEATLTEHEATHTGPAPYVCSDCGKKYRKREAMIYHKKQHKPDKMFYCEVCLKAFNAQCKLQRHLLSHNEKKFVLRYECPVCAHMFHTKYHIQMHLTTHQKEGLIQEENRNDILAMVLQNARKFPKQTDAPTTNLTEILPNDDRSRICNICGEIFQHFYYLEEHLKSHGSKIALEDINNEEEKKHICKVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGIKKYQCHICCKFFTRTSYLRIHVRTIHGTQDYNFRVGKEYGNGESMDVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00640751;
90% Identity: -
80% Identity: -