Rfor026678.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720229.1:6038915-6043390[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.013 1 10.8 0.0 1 23 243 266 243 266 0.94 2 10 0.12 9.6 7.8 0.1 2 23 291 313 290 313 0.93 3 10 0.0022 0.18 13.2 1.0 1 23 336 358 336 358 0.98 4 10 1.2e-05 0.00097 20.3 0.8 1 23 362 384 362 384 0.98 5 10 0.04 3.3 9.2 8.2 1 23 389 412 389 412 0.96 6 10 0.00041 0.033 15.5 0.7 3 23 421 442 420 442 0.96 7 10 2.8e-05 0.0023 19.2 0.9 1 23 448 471 448 471 0.98 8 10 3.1e-05 0.0025 19.0 3.0 2 23 478 499 477 499 0.96 9 10 8.4e-07 6.8e-05 24.0 2.0 1 23 505 527 505 527 0.97 10 10 1.5e-05 0.0012 20.0 2.3 1 23 533 556 533 556 0.97
Sequence Information
- Coding Sequence
- ATGGAAGTTAGAACTTGTCGGTGTTGCCTCTCGCCAGGCATCCACAAAGATCTAAATACCAGTTACCTGTGGCTGAACAAGAAAGAGATCTATTCGGAAATGCTGCAGGAATGCTTCAACATTGCGTTGAAAATGTCGGACTGCACCAGTACAGCTATCTGCGAGGAATGCATAAAGATTCTCCGCAGCTCGTGCAACTTCAAGCAGCAGGTGCTCCACAGTGAACAGGAGCTGCTGAAGATGCTGCCTGATGCTCAGGACAATGACGAGAAACCAGTGGAAGTGAAGTTGGAACCGCCGTTGGACGATGGAGACGACTCTGATGATTATTTCCTATCAGACGCAGCATCGATGAAGGACATCGTAGTGGAAAACGTGAAGATGGAAGAGGACGTTCCCAAAAAGAGGACGGAGAGGAAGAAGGTCGCAGTAAAGAAGACGGTCAAGAAAGAGTCGTGGCAGTCGCAGAGGATCAAGACTTTGGTCAACAGGCTCGCTACTTCCAtgaATTCAACAGAGATGCCAGAACTGACGATCAGGAAGAGCGACAGAAGCATCGTCAAGGCGAACCGGACGAAAATAACCATAGCCAGAGACAACGACACCAAAATCAACTTCAATTGGACTTCTAAGAACAACCAGCACAAAATCAAACATCGGGAAAATCTCATGACCATTCTAAAGTATTCCAACGCTCTACCGTTCAAGAACAAGAATTTATTGGGCTATATCTGCGGATACTGTGAAGCTACATACCCGGACCCTTTAGATCTCAGATCTCATACAGAGAACGACCATAAGAAAGAAAGATTAGAATATAAAGCCAATTTAGACTTTGAATATAACGTTAAGTTAGATATAACAGACTTAACGTGTATGttatgtgatgaaaaattaGACAATCTAGCGAGTTTGAAGGAACATTTAGTCAAAATCCACGAAAAAACTATATACGAAGATATAAAAGATCATTTACAGcaatttaaattgaagaaaggAGAAGTTTATGATTGTGCTATGTGTTCGGCTACGTATGAAACATTCAAAATGCTTAAACAACACATGAATAAGCATTATAGAAATTATATATGCAGTAGCTGTGATACTTCATTCGCTACGAGAAGATCTTTGAACGCACATCGTATGACGCATCAAGAAGGAAGTTTTAAGTGTGATCATTGTGAAAAAGTGTTTTCTAGTAAGACTAAGAAGCATTATCACGAGAAGACTAAGCATTTAGGCAACAGAAGTATCGCTAACTGTCCATACTGCAACGAATCCTTCCGGAGCTACTATCAACGGAATCAACATTTGATCAAAGTGCATAACTCAGAAACTCCGTATAAGTGTAATGTGTGTAATAAAGCTTACGCGTTGAAATCGTTGTTGATGTATCATATAAAGAAGAGTCATTTAATGGAACGGAACTGTCAGTGTACTGAGTGCGGCTACAGGTTTTTCAGCAAGAAAGCGCTTAAAGCGCACATGGTGAAACATACCGGTGAACGGACGTTTGCTTGTGAAGTGTGTCATAAGTCCTACGCAAGGAAGTATACGTTACGCGAGCATATGCGGATACACAATAACGATAGGAGGTTCAAATGTGAGGTTTGTGGGATGACTTTCGTACAGAAATGCAGTTTGAAGAGCCATCTGCTTTCCAATCATGGGATAACAATGGCAGCTTGTGATATTACTTCTGTTTCCTGA
- Protein Sequence
- MEVRTCRCCLSPGIHKDLNTSYLWLNKKEIYSEMLQECFNIALKMSDCTSTAICEECIKILRSSCNFKQQVLHSEQELLKMLPDAQDNDEKPVEVKLEPPLDDGDDSDDYFLSDAASMKDIVVENVKMEEDVPKKRTERKKVAVKKTVKKESWQSQRIKTLVNRLATSMNSTEMPELTIRKSDRSIVKANRTKITIARDNDTKINFNWTSKNNQHKIKHRENLMTILKYSNALPFKNKNLLGYICGYCEATYPDPLDLRSHTENDHKKERLEYKANLDFEYNVKLDITDLTCMLCDEKLDNLASLKEHLVKIHEKTIYEDIKDHLQQFKLKKGEVYDCAMCSATYETFKMLKQHMNKHYRNYICSSCDTSFATRRSLNAHRMTHQEGSFKCDHCEKVFSSKTKKHYHEKTKHLGNRSIANCPYCNESFRSYYQRNQHLIKVHNSETPYKCNVCNKAYALKSLLMYHIKKSHLMERNCQCTECGYRFFSKKALKAHMVKHTGERTFACEVCHKSYARKYTLREHMRIHNNDRRFKCEVCGMTFVQKCSLKSHLLSNHGITMAACDITSVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012273;
- 90% Identity
- -
- 80% Identity
- -