Rfor028805.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720231.1:8577473-8599190[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.019 1.5 10.3 0.4 1 23 217 239 217 239 0.97 2 11 0.00037 0.03 15.6 1.5 1 23 246 269 246 269 0.96 3 11 6.3 5.1e+02 2.3 1.9 1 19 273 291 273 295 0.82 4 11 1.7e-05 0.0014 19.8 1.9 1 23 300 323 300 323 0.98 5 11 0.0016 0.13 13.6 1.2 1 23 327 350 327 350 0.95 6 11 0.096 7.8 8.0 0.3 3 21 369 387 368 392 0.93 7 11 0.0001 0.0082 17.4 0.2 2 23 440 462 439 462 0.96 8 11 2.5e-05 0.002 19.3 3.2 2 23 472 493 471 493 0.97 9 11 1.6e-06 0.00013 23.1 10.0 1 23 499 521 499 521 0.99 10 11 2.2e-07 1.8e-05 25.8 1.1 1 23 527 549 527 549 0.98 11 11 1.2e-06 0.0001 23.4 1.3 1 23 555 578 555 578 0.98
Sequence Information
- Coding Sequence
- ATGATATCTGAAACCGCGTTTTGTCGAATATGCTTGGCTGCAGACGTGCATATGCACGTTATAGCTCAGACTCCACTCCAAGAAGTATATGAGAAGTTGACAAACATCGCActACATACAGATATGAGGCCCTTAGCAGCATGCTACATCTGCCACTCCCGCTTAAAAAACTCATATAAGCTGATGCAGACCTCTCTACAAGCTGAGAAACTGCTGAGGGGCATTTTGGAAAATAATGAGCTAACCACAAATCCAGCACTCATCACTTCACAAGCTAAGAGCCTACTGACAATATGCGTGACTCCTGTGGAGTATATCTCAACGGAAGTAAACGTCAAGTGTGAGCCGGATGTCCAGAAAACTGAGGTGAAGGCTGAGGAAGCTATAGAATGTCTACAACCGAAAGAAGCCCCAGTATCAGACATAGACGATGACAGACACTTCTCCGATTCAGAAGATGACATCCCGCTGAAGAATATCAGTTTGAAGCAGGAGAAAGTGGAAGTTAAGAAGAAGCAGGAAGGAAAGTCGATACGGAGTGGAAAAATAGtgTACAAGATGAACGCAAAGGAAATCATTCTCACAAAGGAAGAGCAAATAGAAGAGCTCTTAGCTAGGGCTAAGTCTTCAAACTACATAGACTCCCCATACAAATGTGCTCTGTGCTACAAGGGTTTTGTGGACGCTCAAGCCTATGACAATCACAAGGAGAAACATGACGAGAAAAGCGGCGCGTTCGAGTGCGACATCTGTCGCATGCGGTACCGAACGGCGCGACATCTCCGGACGCATGCCGCCACGTCGCACGCCAGGCAGTACCAGTGCAACGAATGCACACACAGGTCCCATACTGCcAACCAGGCCAGAGAGCACGACAAATGGCATAAGGGATACACGTACGAATGTCAATTGTGCGGACAGAAATTCAGAAAACCAACGTCCTACCTGACGCATATGAGGAAAAGTCACCCCACTGAGCACGTCTGTGAAATCTGCGGGGAGAGCTTCGTAGGTAGACACGGTTTGCTCATGCACAAGAGTAAAACCCACAGACACTCCACACAGATACCTGCCAACCCCCAAGAAAGCCCAACGGATGCTTTCTGCGTGGACTGCAATATACAGTTCGTGGCGAGGGACGCGTGGAAGCGACACATGCTCAGCTCCTTCAAACACAAGTCGAAGAACCAGGACAGTTCAGAGTGCCGTATTTGCGGGGATAGCGTCCACGGTTCGCTCGCCGAACATATGCGCGAGCATGCTCGCTCTCTTCGCTCGCCACGAGCCAACGAGCGCGTGACGTCACACGCCAAACTCCCATGCCAACAGTGCGGCTCAATATTCGCCAACAAGTCCCGCCTGGTAGCTCACATGCGCCGCACGCATCTCGGCTTGAAGTACAACAAGAACATCGTGTGTGAAGTGTGCGGGAAACACTGCTCGTCCAACGCTACCCTCAAGTATCACCAACGCACCCACACAGGCGAGAAGCCCTTCAAATGCAGCCACTGCCACAAGAGATTCTCAAACAACAACCATCTCACCATACACATGAGAACGCATACTGGAGAGAAGCCGTACAGCTGCTCCAGTTGTGGGAAGAGGTTCACTCAGAAACCAGCGCTGAACAGACATCAAAGGGTGCACACAGGGGTGAAGCCGTACGAATGCCAGTACTGCTCCAAGCGCTTCAGTCAGTCCAACTCTCTGAACATCCACATCAAGAGCGTACACCTCAAACTGCCGGGGACGAGGAAGAAGCTCGACAAATTGCAGGAAGTGCCCGTCACTACAACGGTCAACGCGCCAATTTAA
- Protein Sequence
- MISETAFCRICLAADVHMHVIAQTPLQEVYEKLTNIALHTDMRPLAACYICHSRLKNSYKLMQTSLQAEKLLRGILENNELTTNPALITSQAKSLLTICVTPVEYISTEVNVKCEPDVQKTEVKAEEAIECLQPKEAPVSDIDDDRHFSDSEDDIPLKNISLKQEKVEVKKKQEGKSIRSGKIVYKMNAKEIILTKEEQIEELLARAKSSNYIDSPYKCALCYKGFVDAQAYDNHKEKHDEKSGAFECDICRMRYRTARHLRTHAATSHARQYQCNECTHRSHTANQAREHDKWHKGYTYECQLCGQKFRKPTSYLTHMRKSHPTEHVCEICGESFVGRHGLLMHKSKTHRHSTQIPANPQESPTDAFCVDCNIQFVARDAWKRHMLSSFKHKSKNQDSSECRICGDSVHGSLAEHMREHARSLRSPRANERVTSHAKLPCQQCGSIFANKSRLVAHMRRTHLGLKYNKNIVCEVCGKHCSSNATLKYHQRTHTGEKPFKCSHCHKRFSNNNHLTIHMRTHTGEKPYSCSSCGKRFTQKPALNRHQRVHTGVKPYECQYCSKRFSQSNSLNIHIKSVHLKLPGTRKKLDKLQEVPVTTTVNAPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00013362;
- 90% Identity
- -
- 80% Identity
- -