Basic Information

Insect: Rhodophaea formosa
Gene Symbol: -
Assembly: GCA_963082605.1
Location: OY720219.1:18155211-18175443[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.017 1.4 10.4 1.5 1 23 336 358 336 358 0.97

2 12 0.0014 0.11 13.8 1.2 2 23 366 387 365 387 0.93

3 12 0.0041 0.33 12.4 0.8 1 23 391 413 391 413 0.98

4 12 0.001 0.081 14.3 2.5 1 23 418 441 418 441 0.98

5 12 0.00039 0.032 15.6 0.3 1 23 445 468 445 468 0.95

6 12 0.018 1.5 10.3 0.2 2 20 489 507 488 513 0.92

7 12 0.00065 0.053 14.9 0.6 3 23 523 544 522 544 0.98

8 12 1.9 1.5e+02 4.0 0.0 3 23 565 586 564 586 0.94

9 12 6.7e-06 0.00055 21.1 0.5 1 23 597 619 597 619 0.99

10 12 5.3e-07 4.3e-05 24.6 1.9 1 23 625 647 625 647 0.99

11 12 0.00011 0.0089 17.3 1.5 1 23 653 675 653 675 0.97

12 12 1.6e-05 0.0013 19.9 0.3 1 23 681 704 681 704 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.017	1.4	10.4	1.5	1	23	336	358	336	358	0.97
2	12	0.0014	0.11	13.8	1.2	2	23	366	387	365	387	0.93
3	12	0.0041	0.33	12.4	0.8	1	23	391	413	391	413	0.98
4	12	0.001	0.081	14.3	2.5	1	23	418	441	418	441	0.98
5	12	0.00039	0.032	15.6	0.3	1	23	445	468	445	468	0.95
6	12	0.018	1.5	10.3	0.2	2	20	489	507	488	513	0.92
7	12	0.00065	0.053	14.9	0.6	3	23	523	544	522	544	0.98
8	12	1.9	1.5e+02	4.0	0.0	3	23	565	586	564	586	0.94
9	12	6.7e-06	0.00055	21.1	0.5	1	23	597	619	597	619	0.99
10	12	5.3e-07	4.3e-05	24.6	1.9	1	23	625	647	625	647	0.99
11	12	0.00011	0.0089	17.3	1.5	1	23	653	675	653	675	0.97
12	12	1.6e-05	0.0013	19.9	0.3	1	23	681	704	681	704	0.98

Sequence Information

Coding Sequence: ATGGAAGGGGAGACAGTTTGCAGAGTATGTCTCGTAGTGGGTGTTAGGATGTATGATGTGAAATGTAATCCAGTAAAAAATTACTTAGAGGCCATAGTTGGAGTCAATCCTCTAGGTACAATGCTTCTACCACCTTATGTTTGCTTCGAGTGTGAAGCTCTGGCCAGGAAATACTTCTTGTTCAAGGAGAAATGCATGAAGGGCCAGGCAGCTCTGTATGACATGCTGAGTCTCTATGGAAAGATCAATGTAAATGAAATTGCACACTTGAGGGAAAGCTTTAAATTAGCTTCAACTCTCACTCTGGATGACCAAACCCACGTAATAGACTACTGCTATGAAGAATCCAACTGCTTAGAGGAATCAAAGGAGGAAACAGAAGATGACGTTAAAGCAGAGCCATTCGACGATAATTCCCTTCATTTCTCGGAGACACTAGAAGCAGACGTCTTGCTGGAAAGTATTAAAGAGGAAGATGATAAAAAAGAGTTTGAGGTGTTTCTAAATTCACCGGTGTCGAGTGACGATGAGCCGCTCTCCACGCATAAGAGAAATAAGACTGAACGGGAGAAAAGGACGGAGCAGAATGGAGACACAGCAACTGCCTCCGACGCGCCAGTGAAACGCAAACGCGGCCGACCAAGGAAGAACGAGCTGCGGCCGAAAATGGAGCCTGGACATGAGCCGCGCAAGCGCAAGCCCAGGCGGCGGAAACCCAACCACACGGGCTCCGTCACCGTCGAAGATGACGTTGATCTAGATTTGGAGAATTATGTTGACATCATCATACTATCGTACTACATAGTAAGGGAGAATTTTGGAGATAACACGGAGTTGGTCTGCAAGCTTAGGTGGAGGAAACCCAACCACACGGGCGCCGTCAGCGTCGAAGATGACGTTGATTTGGACTTGGAGAATTACGTCGACATCATAATACTATCGCCCACAGAGCAGCTAGCGGAAATAGAGAAGAGGAAGGAGTCGACCAACTTCCAAAACGCAGCGTTCCAGTGCGAATTCTGCTACAAGGGGTTCATTGACTCCACGGCCTGGGACCACCACCGTGCCAAGCACGACCCTagCGCAGGCAACATATCGTGTCCAGTGTGTAAAATCCGGTTCAAGAACAAGCGGTCGTACATGAAGCACTTCGCCAACCACGAGAAGAGGTACCAGTGCAAGGCGTGTCCGTACGTCTCGAAGACATCAACGCAGGCCAAACAGCACCAGAGATGGCACAAAGGTGTGACGTACAAGTGCCAACACTGTGACGAGGTCTCCACCAAATGGACGTCGTACCTGTCTCACGTGCGAATGAAGCACCCCTCGGAGTTCATCTGCAACGTGTGCGGGTACTCGTTCGTCAGCCGCCTGGGACTCACCATGCACCGCACCATGATGCACAAGGGTGCTGCCgAAAATGAGGAAGCTGATGGAGGAACCAAGTCTGAACAGTCGGAGCTGTACTGCGCGGAGTGTGACGTCAAGTTCGGGTCGGAGGAGGCGTTCAAACGACACATGGTCATGTCTTCAAAGCATCTGAAGGAAGATGCGGACAGTCACGGCTGCCGCGAGTGCGGGCAGCGGTTCGCGCTGGCGGAGGAGCTGCGCGTGCACCACCGGACACAGCACGCGCGCGCGCGCCCCAAGAACTACGGCAAGCGGCCGCAGCAGTACTCCTGGCCCGCGCCCTGCTCGCTCTGCGGCGAGCAGGTGCCGAGCGGGCGCGCGTACTGGACGCACTTCCGGCGCGCGCACCCCGGCCTGCCCTACCCCGTGCGCAAGGACTACGTCTGCGACATCTGCGGGAAGAGCTTCCGAGGTAACGCGTTCCTAGTGTACCACAAGCGCACGCACACTGACGAGCGCGCGTACCAGTGCCCGCAGTGCCCCAAGGCGTTCCACAACCGCACCAACCTGCAGATCCACCTCAAGACGCACTCCGACCACCGCCCGCACCCCTGCGACGTCTGCTTCAAAGCTTTCAAGTCCAAGGGAGCTTTGGACAGGCATTTCAGAAGTCACACCGGAGTGAAGCCATACGAATGTGAAGTGTGCGGCAAAGCATTCAACCAGTCAAACAGTCGGAAACTACACGTGCGGACAGTTCATCTCAGACAACCGTCACCTTACATTAGTCGGAACCGTAGTGAGAAACGTACCAGGCGAGAAACACAGCCACAGTTCTAG
Protein Sequence: MEGETVCRVCLVVGVRMYDVKCNPVKNYLEAIVGVNPLGTMLLPPYVCFECEALARKYFLFKEKCMKGQAALYDMLSLYGKINVNEIAHLRESFKLASTLTLDDQTHVIDYCYEESNCLEESKEETEDDVKAEPFDDNSLHFSETLEADVLLESIKEEDDKKEFEVFLNSPVSSDDEPLSTHKRNKTEREKRTEQNGDTATASDAPVKRKRGRPRKNELRPKMEPGHEPRKRKPRRRKPNHTGSVTVEDDVDLDLENYVDIIILSYYIVRENFGDNTELVCKLRWRKPNHTGAVSVEDDVDLDLENYVDIIILSPTEQLAEIEKRKESTNFQNAAFQCEFCYKGFIDSTAWDHHRAKHDPSAGNISCPVCKIRFKNKRSYMKHFANHEKRYQCKACPYVSKTSTQAKQHQRWHKGVTYKCQHCDEVSTKWTSYLSHVRMKHPSEFICNVCGYSFVSRLGLTMHRTMMHKGAAENEEADGGTKSEQSELYCAECDVKFGSEEAFKRHMVMSSKHLKEDADSHGCRECGQRFALAEELRVHHRTQHARARPKNYGKRPQQYSWPAPCSLCGEQVPSGRAYWTHFRRAHPGLPYPVRKDYVCDICGKSFRGNAFLVYHKRTHTDERAYQCPQCPKAFHNRTNLQIHLKTHSDHRPHPCDVCFKAFKSKGALDRHFRSHTGVKPYECEVCGKAFNQSNSRKLHVRTVHLRQPSPYISRNRSEKRTRRETQPQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -