Rfor026363.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- ZFX
- Assembly
- GCA_963082605.1
- Location
- OY720229.1:963682-969175[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.3e-05 0.0035 18.6 0.6 2 21 221 240 220 241 0.94 2 20 0.6 49 5.5 0.2 2 23 246 267 246 267 0.91 3 20 0.00038 0.031 15.6 2.5 1 23 272 295 272 295 0.96 4 20 0.0017 0.14 13.5 1.8 2 23 301 322 300 322 0.97 5 20 2.2 1.8e+02 3.7 5.6 1 20 325 344 325 345 0.95 6 20 0.002 0.16 13.4 0.3 1 23 361 384 361 384 0.94 7 20 0.00025 0.02 16.2 0.4 1 23 390 412 390 412 0.96 8 20 4.5 3.7e+02 2.8 0.4 5 23 422 440 420 440 0.94 9 20 2.9 2.3e+02 3.4 0.5 1 23 446 469 446 469 0.87 10 20 0.0003 0.025 15.9 0.2 3 23 479 500 478 500 0.98 11 20 0.039 3.2 9.3 1.5 2 19 616 633 615 636 0.91 12 20 0.48 39 5.8 0.4 2 23 642 664 642 664 0.92 13 20 0.11 8.7 7.9 1.1 1 23 669 692 669 692 0.93 14 20 1.2e-05 0.00096 20.3 0.3 2 23 698 719 697 719 0.96 15 20 1.3 1.1e+02 4.4 1.5 2 21 723 742 723 743 0.91 16 20 7.2e-06 0.00059 21.0 0.3 1 23 769 792 769 792 0.94 17 20 0.00014 0.011 17.0 1.1 1 23 798 820 798 820 0.98 18 20 0.094 7.6 8.1 0.1 1 23 826 848 826 848 0.97 19 20 0.74 60 5.3 0.3 1 23 854 877 854 877 0.78 20 20 0.0023 0.19 13.1 0.8 1 23 883 906 883 906 0.96
Sequence Information
- Coding Sequence
- ATGGCGATTGCCGACACCCTGCCAAACCAGCTCTGTACAGGGTGCGCCAAAAGCGCCACTGGCGTCATTCCCTTCATACGCCTCGCCAAAGACTCCTCCAAGCGCTGGCATCAAATAACCGACTACCTTTTCACCTTAGAAGGCACGAATCCTAAACGAGAGCTGAAAAAGCGAAAGAACGTTTACGTCCAAATTGGAGACGATATACAAACACACGTATCCTTGAGGTACAAAGAAGCACCGACGCCGCAAAGACTGAAAAACTTGAAGAAGACTTTAAATAGGTCGAAAACGGGCGGCAAGAAATGCATGAACGTGCTAGTTGGATGTCCTGAGTACTCGTTTCAGGTGGCCGAGGAGTGCGGAGTGCCAAGAGGGATCTGCAAGACTTGTCTGCAGGACGCACTGGCCGCCTATCACTTCAGGCAGCTCTCACGAGCCTCCGCTGAGCACTGGGAAAATGCCGCCACACTACTCACCCAACTACACCAACCCACAGAAGAAGACAAGTCTTATTACGTCTTCTATCCAGCAGATGATAAATCTATAACCGTATTCAAAGATCAAGCGCAAACCGTCAAATCTAAAGACGAGGCGCTGCAAAGACTATTTGAGTTTGACAAACctcgaaggaccaaaaaggCTGTGAACTTCAGCTGCTCCTGTCCTGACTGCGGGAAGACCTTCAACGGACCGTTATATTTAAACAGGCATCTAAGGAATACGTTAAAGCGAGTCTGCACTGAATGCGGCAAGGTTATGCCGAAAGCAAAACTGGCGATGCATATGTCCAAATACCACAACACTATCGTATACGACTGCAGTGTGTGCCACAAACAGTTCAGTGATAACGCCAAGTTAATTCAGCACTCAAAAAAAAGTCACAGCAATAAAAATACTCAGTGTCATGTTTGTAAAAGTGGCTTCGACTCATCGAGGTCTCTAAACGCGCATATGTACTCCCACTCGTTGTTCCACTGCAGCAGTTGCTCAAAAAGCTTCGATAACCTAAAATGTTACAGATACCATCAGGGCCAGTGCAATAATAGCAAATCCCGTGACGTAGAAGACGAAGATAAGTTTATCTGTGATTATTGCGGATCATCCTACGACAAAAAGCCGTCGCTACGTATCCATATCATCCAAAAACATTTACACGTCTTACCTTACGTTTGCGAAACTTGCGGGAAGAGAACGTCTACGATCGCACATTTAAGATCACACGAAGCAGTTCATACGCAAAAGAGGAAGATATTCGAATGCTACTGCGGTGCTCGGATGCGAACAGAGTTCGGATTTCAAATGCATCAACGTATACATACGGGTGAAAAGCCTTACGAATGTCAAGAGTGCGGTGATAAGTTTCTATCGGCTTCTAGAAGGTTGGATCATATAAAGCGTAGGCATAGGAGCACTAAGGATATGCCGCATGGATGTGACAAGTGTCCAGCGAGATTCGTCAGGCCGTTTGAGTTGAAGAAGCATTATTTGACAGTACACTACTTGCAGATAGAAGTAGCGCCCGCGCCGCGAGCTGTGGCCGACGAGCCGCTGTGTCCACTTGGCACCTGCATCACGTGCGTGTCGAACGCGCTCGCCGCCCAGGAGTTTCGGATCTTCGTCAGGAACTCCCAGAGGATATGGGCCAAAGCCCTGACCTCCCTAGACGACCTCCCGGAAGCGGCAGCCCCGCCCGTCAAAACCCTATGCGCCTTCATCAAACCCGACACATTAGCTTTACACACGTATAAGAATTACACTGGAGGAGACACCAAAACtgtattaagtaaaataaaaactcgtCTAACTAAGAAAAAACGCGTCGTTCGGACCGGCCCGCCCTGCGACTGCCCGGATTGCGGCAAAAACTTCCTCAGTCCACATTATTTAAGCGCGCATTTTAGCAACAGCGGACAAAAAGAAGTGTGTAGTATCTGCGGATCTGTTATATTTAGAGGGAAACATATGAAGAAACATATGGCGGAAGTTCACGGACAGAACCTGTTTCTTTGCAAAAACTGTCCCTTGTTGCTCAAAAGTAAATTTCTGTTGAAAAAGCATGTCAAAAATGCGCATAAAGTTGGTGCCTTAACGTGTAGCGATTGCGGACGGAGTTTCCCAAGAAAAGGATCCTTCGAAGCTCATTCGCAAATGCATGCAGTACGGACTTGCAGAGCGTGCGGTGTTCAATTTACCAATAGAGCGTGCTATAGAGAACATAGGTCTAAATGCGAGCCGGACGCGAAACCGGACGTAAAATCATTGCCGCGAAGCAAACGCTGCAACGTCAGAGATCCGGCGTACTTTATATGTGACTACTGTGATAAGACTTACACATCTAGACCGCAACTGAAGAATCACATTATCTGGATTCACATGGACGTACGCCCGTACCAATGCACGTACTGCCAAAAAAAGTTCTACACGTCCGCTAGGTTGGCAGAGCACACGATTGTCCACACGCGCGAAAGGAATTTCGAATGTGATATTTGTGGCGCGAAATTGGTTTCCAAAATGGCCGCCGTTTACCATAGACGAAGGCATACTGGCGAAAAGCCGTATGAATGCGTAGATTGTGGAGAGAAATTTTTGTCGGCTTCGAGAAGGTCGGAACACGCTAAAAGGAGGCATGGGAAAGGAGTGAGGCATCAATGTTCAGTGTGTCCGGCCAATTTTGTTAGGACTATTGAATTGAGGAAACATGTTGAAAAGTATCACAGCCAGCCGCCGAACTATATGGTGGCAGTGGAAGGATGA
- Protein Sequence
- MAIADTLPNQLCTGCAKSATGVIPFIRLAKDSSKRWHQITDYLFTLEGTNPKRELKKRKNVYVQIGDDIQTHVSLRYKEAPTPQRLKNLKKTLNRSKTGGKKCMNVLVGCPEYSFQVAEECGVPRGICKTCLQDALAAYHFRQLSRASAEHWENAATLLTQLHQPTEEDKSYYVFYPADDKSITVFKDQAQTVKSKDEALQRLFEFDKPRRTKKAVNFSCSCPDCGKTFNGPLYLNRHLRNTLKRVCTECGKVMPKAKLAMHMSKYHNTIVYDCSVCHKQFSDNAKLIQHSKKSHSNKNTQCHVCKSGFDSSRSLNAHMYSHSLFHCSSCSKSFDNLKCYRYHQGQCNNSKSRDVEDEDKFICDYCGSSYDKKPSLRIHIIQKHLHVLPYVCETCGKRTSTIAHLRSHEAVHTQKRKIFECYCGARMRTEFGFQMHQRIHTGEKPYECQECGDKFLSASRRLDHIKRRHRSTKDMPHGCDKCPARFVRPFELKKHYLTVHYLQIEVAPAPRAVADEPLCPLGTCITCVSNALAAQEFRIFVRNSQRIWAKALTSLDDLPEAAAPPVKTLCAFIKPDTLALHTYKNYTGGDTKTVLSKIKTRLTKKKRVVRTGPPCDCPDCGKNFLSPHYLSAHFSNSGQKEVCSICGSVIFRGKHMKKHMAEVHGQNLFLCKNCPLLLKSKFLLKKHVKNAHKVGALTCSDCGRSFPRKGSFEAHSQMHAVRTCRACGVQFTNRACYREHRSKCEPDAKPDVKSLPRSKRCNVRDPAYFICDYCDKTYTSRPQLKNHIIWIHMDVRPYQCTYCQKKFYTSARLAEHTIVHTRERNFECDICGAKLVSKMAAVYHRRRHTGEKPYECVDCGEKFLSASRRSEHAKRRHGKGVRHQCSVCPANFVRTIELRKHVEKYHSQPPNYMVAVEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -