Basic Information

Insect: Rhodophaea formosa
Gene Symbol: -
Assembly: GCA_963082605.1
Location: OY720231.1:8114957-8116816[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.6e-06 0.00045 21.4 5.6 1 23 37 59 37 59 0.99

2 18 9.7e-05 0.0079 17.5 2.1 1 23 65 87 65 87 0.98

3 18 0.01 0.84 11.1 5.5 1 23 93 115 93 115 0.97

4 18 2.5e-05 0.002 19.3 6.1 1 23 121 143 121 143 0.97

5 18 0.0017 0.14 13.5 1.2 1 23 180 202 180 202 0.90

6 18 0.00011 0.0093 17.2 5.0 1 23 208 230 208 230 0.98

7 18 0.0044 0.36 12.2 0.4 1 23 236 258 236 258 0.98

8 18 3.8e-06 0.00031 21.9 1.2 1 23 282 304 282 304 0.99

9 18 0.0011 0.087 14.2 6.5 1 23 310 332 310 332 0.98

10 18 5.2e-05 0.0042 18.3 3.3 1 23 338 360 338 360 0.99

11 18 5.9e-06 0.00048 21.3 4.8 1 23 374 396 374 396 0.95

12 18 0.0032 0.26 12.7 4.1 1 23 402 424 402 424 0.98

13 18 1.1e-05 0.00087 20.5 1.5 1 23 430 452 430 452 0.98

14 18 5.2e-05 0.0042 18.3 0.1 2 23 477 498 476 498 0.96

15 18 1.2e-08 9.7e-07 29.8 2.2 1 23 504 526 504 526 0.99

16 18 3.4e-05 0.0028 18.9 4.8 1 23 532 554 532 554 0.98

17 18 0.00015 0.012 16.9 4.8 1 23 560 582 560 582 0.97

18 18 0.012 0.95 10.9 3.9 1 23 588 610 588 610 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.6e-06	0.00045	21.4	5.6	1	23	37	59	37	59	0.99
2	18	9.7e-05	0.0079	17.5	2.1	1	23	65	87	65	87	0.98
3	18	0.01	0.84	11.1	5.5	1	23	93	115	93	115	0.97
4	18	2.5e-05	0.002	19.3	6.1	1	23	121	143	121	143	0.97
5	18	0.0017	0.14	13.5	1.2	1	23	180	202	180	202	0.90
6	18	0.00011	0.0093	17.2	5.0	1	23	208	230	208	230	0.98
7	18	0.0044	0.36	12.2	0.4	1	23	236	258	236	258	0.98
8	18	3.8e-06	0.00031	21.9	1.2	1	23	282	304	282	304	0.99
9	18	0.0011	0.087	14.2	6.5	1	23	310	332	310	332	0.98
10	18	5.2e-05	0.0042	18.3	3.3	1	23	338	360	338	360	0.99
11	18	5.9e-06	0.00048	21.3	4.8	1	23	374	396	374	396	0.95
12	18	0.0032	0.26	12.7	4.1	1	23	402	424	402	424	0.98
13	18	1.1e-05	0.00087	20.5	1.5	1	23	430	452	430	452	0.98
14	18	5.2e-05	0.0042	18.3	0.1	2	23	477	498	476	498	0.96
15	18	1.2e-08	9.7e-07	29.8	2.2	1	23	504	526	504	526	0.99
16	18	3.4e-05	0.0028	18.9	4.8	1	23	532	554	532	554	0.98
17	18	0.00015	0.012	16.9	4.8	1	23	560	582	560	582	0.97
18	18	0.012	0.95	10.9	3.9	1	23	588	610	588	610	0.98

Sequence Information

Coding Sequence: ATGTTTCTCTACGCAGGAGCCGCGGCCATCTCAGAGATGTCTGAAGATTTgattaaaacaaaagaatacCTGTCCCTAGAATACGTGTCGATAAACAATCGGAGGCGCTACAAATGCCACTTCTGTCAAAAGGTATTCGTCAACAGAGACCACATGCGAGCGCATTTGAGAATGCACACTGGCGAGAAACCTTACAACTGCATGTACTGCGCTGCCAGTTTTGGGAGAGTCTATCATCTAAAAAGACATATACgaactcacactggtgagaaaccgcacaaatgtgatttttgcatTGCCAGCTTCAGTCGTCTTTACCATTTAAAACGCCACCTGACGTCACATGCGGACGTAGCGCCTCACAGCTGTAACGTGTGCCATCGGCGGTTCACGCGCGAAGATAATTTAAGGACGCATCAGAAACTTCATAAACAAAGTGAGACTTCAGAGAAAACTGACGAGAAACCTATCAAAACCGAAAAGAGTGAAAAGAAAGTTGAAGATGTTAATATTGGTCAAGGATTAGACATAAAACCGTATGTATGCATAGAGTGTGGCGAGGCTTTCAGTCAGCATAAACAGCTGAGGAAACATTCATACGAACACACCGGAGAACCTATCTACCAATGCGATTACTGTCAGAGAACGTTTAACAGAAAGTGTTACATGAgagtacatataataaaacatatggaCGATACGAAATATGAATGCGATCTATGCCGGCTTAAATTTTCCAAAGAAGAGATGTTGGCAGAACATTTCAAAGTTCACGCTGTCGAAATAAAGGCAGAGGCGAACGCTGGCGCCAAAACTGAAGAGGAAATTGATAGCAAGAAGATTTACCAATGTAATCAATGTGGCGCTAGGTTCGCTCGGAACTACCGCCTAAAGCGACATCTGCTTATGCACGGCGGGGAGGCGCTGTACGAATGTGTCTTCTGCCATTGTAAATTCAATCAGAAAGTTAATTTGCGAGTCCATCTTAAAAAACATACAGGGCAGGTCACCTACAAATGTGATGTCTGCCGACGTAGGTTCACAGAAAAAGATAAATATGAGAAACATATAAAGAAGCATGTCGGAGGAAAAACAAAGAGCATATATGATTTAAAACCGTTCCTTTGCAACCAATGCGGGACCAGGTTTAGTCGTCGCTATCATTTGAACAGGCATTTAACCACACATAGCAGTGAACCGATTCATAAATGTGACTTCTGCCCGTGTGTATTCAATCTAAGGAACGATTTGAGAGTACACCTTAAATCGCACGCTATGGAGAAGAAATACGAATGTGAAGTGTGTCAACGTAGGTTTAGAGTAAAGAAAAGCTTGGAGAAACATTTGTTAAAGCACAGTGAAGAGTCTAATGGCGATAAAAAGGTGAAAAGCGAAAAGAAACCGCCCAAGACAGATCACGAGATAGTTGTCTGCAACGTTTGTGGAATCGTATTGAATCGAAAATATGATTTAAAGAGGCATTTGTTACAACACTCGGGCGAGAAACCTTTCCAATGTAACGTGTGTCAAAAGAGTTTTACTCAAAATAGTTCGCTGACGGTTCATATGAGAAGGCACATTGGGTACAAACCATTTGAATGTACTGTCTGTCATTATAGATTTTACGAGAAGAGTAATCTAACTACTCACATGACGAAGCATTCAGATGAGAAACCACACGAGTGTGATGTATGTCATCGTAAGTTCAAAAGGAAGGATGTGCTGACGATGCATCAGAAAATACATTCTGGCGAGAAACCACACGAATGTTACATCTGTCTACGCAGGTTCGCTCTGAAGAAAACGATGAAAAAACATCTGAATACACACAAAATCGAGAAGGTTGAAAATTTCGTATAA
Protein Sequence: MFLYAGAAAISEMSEDLIKTKEYLSLEYVSINNRRRYKCHFCQKVFVNRDHMRAHLRMHTGEKPYNCMYCAASFGRVYHLKRHIRTHTGEKPHKCDFCIASFSRLYHLKRHLTSHADVAPHSCNVCHRRFTREDNLRTHQKLHKQSETSEKTDEKPIKTEKSEKKVEDVNIGQGLDIKPYVCIECGEAFSQHKQLRKHSYEHTGEPIYQCDYCQRTFNRKCYMRVHIIKHMDDTKYECDLCRLKFSKEEMLAEHFKVHAVEIKAEANAGAKTEEEIDSKKIYQCNQCGARFARNYRLKRHLLMHGGEALYECVFCHCKFNQKVNLRVHLKKHTGQVTYKCDVCRRRFTEKDKYEKHIKKHVGGKTKSIYDLKPFLCNQCGTRFSRRYHLNRHLTTHSSEPIHKCDFCPCVFNLRNDLRVHLKSHAMEKKYECEVCQRRFRVKKSLEKHLLKHSEESNGDKKVKSEKKPPKTDHEIVVCNVCGIVLNRKYDLKRHLLQHSGEKPFQCNVCQKSFTQNSSLTVHMRRHIGYKPFECTVCHYRFYEKSNLTTHMTKHSDEKPHECDVCHRKFKRKDVLTMHQKIHSGEKPHECYICLRRFALKKTMKKHLNTHKIEKVENFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00640661;
90% Identity: iTF_00640661;
80% Identity: -