Rfor007894.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720209.1:12434708-12437341[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-07 8.2e-05 23.1 0.1 4 43 19 59 16 61 0.89
Sequence Information
- Coding Sequence
- ATGCCGCGCAATTACGTTAGAAAAACTGACAGAAGTACTAACTATACAAAACAACAGTTATTAGATGCTGTAGAAGCTGTTAAAAATGGCAGTATTACCGCATATGCCGCGTCAAAGGTGTATAATATACCAAGGGCGACTATAGTAAATCGGGTTTATGGCCGAAAAGGTACCAAATCGGATACACTAGGAAAACCCACGGCACTTCCTAAAGAAGTTGAACTAAAGCTAGCAGAAAATCTTCATATAATGGAGAAGTATGGATTTGGATTGACACGGAAGGAATTACTTGAGTCGGTAGGCGAATACGTAGCCACAAACAATATTGAAACCCCATTTAGAAATGGGATACCAGGAGAAGACTGGTTCCTCGGCTTCAAAGAAAGACACAACCTTTCAGTCAAAAAACCTCAACCTGTGGAATATGCTAGAAAACGAGCATGTCGCCCAGCGGTCATTTATCCTTACTTTGATTTACTCGAAAAAACTATTTGCGACTTGGGTTTACAGGATAAGCCATGTCATATATGGAATTGCGATGAAACGAGCTTCTGCAAGGATCCAACTAAGTCTAAAGTAGTAGGCCGTCAAGGATATACGTCCACAAGAACAGTCTCTTCTCCGGGAAAGACAAATATTACCGTGCTATTAACATGCAACGCTGCTGGTGAAAAAGCCCCACCTCTTATAGTTTTCAAAGGAAAAAATGTATGGGATAAATGGTGTTCAGAAGATGGATATCCCGGCACTGTATATGCTGCCACAAAAAATGGTTGGATGGAGACGCAagtttttgaaaactttttccaaaaagtttttttaccaACCGTTGGACAAAAAAGACCCATCCTTCTCATTTATGACGGCCACGCTACGCACGTCggtattaacataataaaaatagccCGGGAACATAACATAACAATACTTAAAATACCACCACACTCCAGTGACTGCTTACAACCACTAGATCTGGCAGTGAACAAAGCTTTCAAGGACAAATGGGACATGGCCTTAGTCAAATGGCAAAGGTTGAATATTGGGATGGTCTTGCCTAACAATGAGTTTGCACGAATTGTTGGTCAAGTGTGGACTCAGATAGATCCAAAAGTTTGTGCAGCTGGCTTCCGTAAGGCAGGAATTTATCCTCTTGATAAAAACGTCATTCCTGAAAGTAAATTCGATCCAGTTCTATTGTCGGAGTGGAAACGTAAACTACAAGACCCAATAACTCCAATTATTCAGCAAACGACAAATGAATCCGTCCCAGCTATTTCAGCATTTAACTCCACTCAAAACATTTCTCAAGTTATTAATAGCATCCAGTTTGAAGCCTTTCGTTCGCCATTGAAAGAAGTTATTTGTCCAAGAAAATTAAGTGAAATAGCTCTGACCATCATAAATATCGCATTAAACAAGCCCCAAGTTGCTCCcgtaaatttcatttcaaaagcTAGTTGCAAACAGATTCACGTCTCATTGAATAATTGCACCCCCGTTGCAAAAAATGATATACTGAGACTTCAAAATCATCGAGAACAATGTGAACCAGTAGTGCAAACAATATATGTAGACCATGACGAAAAACAATCTTCAAATAATAAAGTCATAGTGAACCAGCCACCGAATATTAAAGAATCAACAAAAGCTCAGATTCTTGATGTCCAGTCAGTTAAAAGTAATATAACTTTTGAACAAATACTTTTGAATCAAATAAAATCTGGAAGAAATACTTTTAAAGCCAAACGAAAAAAAGTAGCAATAGGTGCCGAAGTAATTACTCACGATGACGTGTACCAAAGATGTAAATTAATGGAAATCGAGAAGGAAAAAGACATggaaaagaaatttaaaaagcaagaagataagaaaaacaaaaagcaagCCGAGACATCAcagagaaacaaaataaaaaaagaaaaaaaagtgtcGAAGAAGCTAGAAACTGAGAAATTTTACAAAgatgaagaaaataaacaagttaCCAAACAAAATACTTCAAACAAAGCAAAGAAGAGAAGACGAGATTCAACTTCATCTAGCGACAATGaagatgaaataatttataatgatgAGAGTGATATTGATTGCGACCAGTTTTTTGAGGAACTTGCTCAAGAAGATGAAGAAAATTTcgaaataatgatgaattatgaaagtgaatatgaaaaaaagaaatctggaatggaaaagaaaataaagaagcaAGAAGAAAAGAAGGAAAGCAAGCAACTTTATCAGATAACACATGGGaaagaattattatttgaaaatgacATTGATCTTACAGAAAAAGCCAAGACAAACATAGATACAAAGATGAATATAGATGATATGAGAGATATGCTCTTTTCAGAAAACGAATGGTTACTCGTAAAATTTACTGCAAAAAAATCAGTAAAACACTATGTTGGAATAGTCTTACAGATAAATAGTGAAGGGTTTCCTATTATAAAGTACGCAAGGAAAAAGTCGAAATCTGAGGACGAAACTATATTTACATTCCCTTTAATAGAGGACATATCAGAAGTCAAGCATAGAGAGGACATTGTTTTAAAGCTACCCAAGCCGACGATTGGACGCAGAGGgcaaatcatttttaaaatgtccTTTAATACCTTTAATATTCAATAG
- Protein Sequence
- MPRNYVRKTDRSTNYTKQQLLDAVEAVKNGSITAYAASKVYNIPRATIVNRVYGRKGTKSDTLGKPTALPKEVELKLAENLHIMEKYGFGLTRKELLESVGEYVATNNIETPFRNGIPGEDWFLGFKERHNLSVKKPQPVEYARKRACRPAVIYPYFDLLEKTICDLGLQDKPCHIWNCDETSFCKDPTKSKVVGRQGYTSTRTVSSPGKTNITVLLTCNAAGEKAPPLIVFKGKNVWDKWCSEDGYPGTVYAATKNGWMETQVFENFFQKVFLPTVGQKRPILLIYDGHATHVGINIIKIAREHNITILKIPPHSSDCLQPLDLAVNKAFKDKWDMALVKWQRLNIGMVLPNNEFARIVGQVWTQIDPKVCAAGFRKAGIYPLDKNVIPESKFDPVLLSEWKRKLQDPITPIIQQTTNESVPAISAFNSTQNISQVINSIQFEAFRSPLKEVICPRKLSEIALTIINIALNKPQVAPVNFISKASCKQIHVSLNNCTPVAKNDILRLQNHREQCEPVVQTIYVDHDEKQSSNNKVIVNQPPNIKESTKAQILDVQSVKSNITFEQILLNQIKSGRNTFKAKRKKVAIGAEVITHDDVYQRCKLMEIEKEKDMEKKFKKQEDKKNKKQAETSQRNKIKKEKKVSKKLETEKFYKDEENKQVTKQNTSNKAKKRRRDSTSSSDNEDEIIYNDESDIDCDQFFEELAQEDEENFEIMMNYESEYEKKKSGMEKKIKKQEEKKESKQLYQITHGKELLFENDIDLTEKAKTNIDTKMNIDDMRDMLFSENEWLLVKFTAKKSVKHYVGIVLQINSEGFPIIKYARKKSKSEDETIFTFPLIEDISEVKHREDIVLKLPKPTIGRRGQIIFKMSFNTFNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01302276;
- 90% Identity
- iTF_01281284; iTF_01281282; iTF_00640261; iTF_01281285; iTF_00640262; iTF_01281286; iTF_00640263; iTF_00640264; iTF_00640265; iTF_00640266; iTF_00640267; iTF_00640268; iTF_01302276;
- 80% Identity
- -