Rfor018662.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720219.1:19724510-19725560[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-10 5.2e-08 33.3 0.0 4 39 116 151 115 157 0.88 2 2 2.6 1.1e+03 0.3 0.0 29 45 209 226 207 226 0.83
Sequence Information
- Coding Sequence
- ATGGGCAATAAGGCATATCACTGCTATATCAACTTCCGTATAAGCCGTGTGGTGTTCGGCAGTGTAACACAacaaaacacaagcttaacaaagcttacacaCATGCAAGACCTCTTcgacccgtctgaccagcgtATAAAATTCAAGAGCAAAACTAAGAAGAAAATCAAGAAAACGACCAAGAAAAAAGTACAGCTGGACCCTAAGCTACTTTGTACAAAATGTCGCATCCAGTTTTCCACGGCTGCCGCGTGGCGGCGCCACTTAGACAACAATCATATTGTGTACGATTCTGAaGAGGAAAAACCTTTAAAAGCCAAGAAAGTAAACAATTACTCCTTACAAACCTTACAAAGGGCCTTCGAAGCCGTCAAGAGCAAGGAAATGGGAGTTCGTCAAGCgtccagattttttaaaataccaaaaagTACTTTACAAGGCCGATTGAAGCATGACAACCATCGCGGTAAACGAGGGCCTCCCCCCATCTTCAACGAAGAAGAAGAGGGTATTTTAGTGGAATTCGTGAAAAGCGAGGGTAGTTTGAGACCGAAGGCGGTGAAGGCAGAGGCGGCACTGTTGGCGAAAAGGCTGAAACTCGACAAATTCTTCAAGAAGGGCGCGCCGGGTCCGACTTGGTACGCCAACTTTATAAGACGACATCCGGAGTTGAAACAATATgctaaatga
- Protein Sequence
- MGNKAYHCYINFRISRVVFGSVTQQNTSLTKLTHMQDLFDPSDQRIKFKSKTKKKIKKTTKKKVQLDPKLLCTKCRIQFSTAAAWRRHLDNNHIVYDSEEEKPLKAKKVNNYSLQTLQRAFEAVKSKEMGVRQASRFFKIPKSTLQGRLKHDNHRGKRGPPPIFNEEEEGILVEFVKSEGSLRPKAVKAEAALLAKRLKLDKFFKKGAPGPTWYANFIRRHPELKQYAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -