Rfor028723.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720231.1:7699937-7701961[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-11 1.8e-08 34.8 0.0 2 39 18 54 17 59 0.91
Sequence Information
- Coding Sequence
- atgCCGTTACAATACAAAAGGAAAGGCGGTGTTTCAAGAGGGAAATGGTCGGAATCTGATTTAACGAGAGCTGTTCAAGCTCATCTTGACGGCATGGGGGTCAATGAGGCAGCAAATATGTACGGAATACCAAAATCTACTTTTAAAAGAAGACTGAAAAATAATCAGTTAACTAAATCAGATGTTCTTGGGCCTCCTgagaacgaaaaaaaaattgtggcacATATTATTAAGCTACAGCAAAGAGGATTTACTCCTTCAAGACAAACAGTACGAAAAATGGCCTATAATTTAGCTGAGGAACTCCAAATCAAGCATAATTTCAACCGCGAAAAAAAAATGGCTGGCTTTGGCTGGTTACAGAGCTTTTTACTTAGAAACCCCGAACTCTCTATCAGAAAGTCGGAAGGAGTATCCCAGGCTCGGGCTAAGGGTATGGATAAAGAGAGTGTGGACAggtatttttctcttttaaaaaatgtgatgcaggaaaattgcttgttCAATAAACCAGGCTCCATCTTTAATATGGATGAAACTGGCTTGCAATTAAACAACAGACCTGGAATGGTGGTGGCTGCAAAGAGATCAAAAAGTGTTCCTATGATAACTTCGGGTGAGAAAGGTGAGACTATATCCGTGATCGCATGCTGTAGCGGTGAGGGTTTATTTCTTCCGCCTTATTGTATTATGAAAGGAAAGCACAAAAAAGCTGAATTCGAAGACGGAATGCCACCTGGTTCAGTTGTGAAAATGTCACAAAAGTCGTCGTACGTTACTTCTGACATATTTTTTGACTGGCTTAAAAATCATTTCACCCCTCGCAAACCAGAAGGAAAATGTGTTCTTATCCTCGATGGTCATTCTTCTCACTGCAGTGACGCAGAAATGCTGGAATATGCTGATCAACATGACATCATTATCATTTGTTTGCCCAGTCATACAACACATTACTTACAGCCATTAGATAGAACTTTCTTTAAATccttaaaaacattttactatGATGAATGCAACAGATTTATAACTATGAATCCATCACGAAAATTAAATCGTTTGCAGTTTGGGAAACTACTAGCATCTGCATGGTACAAATCTGCTTGTGTAAATAATGCTATATCAGGGTTTTCATCTACTGGGATAATACCTTTTAATGAGAATGCTATTCCacattatgcatttttatcatctAACATGCTTAGCAATGAATCCAACCAACAGCTAAATTCCAGCACACTTAACAAGTCTTCAACCAGCTTTCAGCCCCCTAAAGAAACCAGCCCTCAGCCTTCTACATCCAGTTCATGCCAAGCAGCATCCATCAGCATTCAGTCATCTACGTTCGACCAAGTCGCATTTTTCAGCCCACAACCTTCTACGTCCAGCCAAGAAGAGTCCATTAGCCTCCAGCCTTCTACTTTCAACCAAGCAACGTCCTTTAGTCTTCAATCTTCTACGTCCAATCAAGTAGCGTTAACATGTGAGGACCTAACTCCAGGTAAGATCTTGGATATTGTGTCTCCCATTCCCTGTGTGGAGAAGACGCACGGCATACGACAAAGATCGAGGCAAGTGGCTGAAGTATTAAACTCTcctgaaaatatacaaaacatcaAGAATAAAAGACAAGGCAAGAAAAGGAAGCAAGCGAGTCAAGTATTTACCTCTTCTGGAAATATAAAAAGCGTCAAGCAAGGAAAAAGCAAGAAAAGCAACAAAGAGATTCAAGCTACagtgaataaaaaatttaaaaagggaAAGGAAAATGCCACCAAAAAATTGAAGAAGAAACGGGAACTGAGTTCTGAAGAGAGTGAGTCAGATTTAGAAGTTATTTCTCTCCGTGACAGCCCTGAAATAGTAGAATGGAACGACGACGAATGTGCTGGCTGTGAAGAAAACTATGATGACACTTTGAGCAGAGATGATTGGTTACAATGTACAATTTGCGAAAGGTGGTCTCATGAAAGCTGCACCAAATATAAAGATATGTGTGACAGATGCGGAGATACCATCACAAATTAA
- Protein Sequence
- MPLQYKRKGGVSRGKWSESDLTRAVQAHLDGMGVNEAANMYGIPKSTFKRRLKNNQLTKSDVLGPPENEKKIVAHIIKLQQRGFTPSRQTVRKMAYNLAEELQIKHNFNREKKMAGFGWLQSFLLRNPELSIRKSEGVSQARAKGMDKESVDRYFSLLKNVMQENCLFNKPGSIFNMDETGLQLNNRPGMVVAAKRSKSVPMITSGEKGETISVIACCSGEGLFLPPYCIMKGKHKKAEFEDGMPPGSVVKMSQKSSYVTSDIFFDWLKNHFTPRKPEGKCVLILDGHSSHCSDAEMLEYADQHDIIIICLPSHTTHYLQPLDRTFFKSLKTFYYDECNRFITMNPSRKLNRLQFGKLLASAWYKSACVNNAISGFSSTGIIPFNENAIPHYAFLSSNMLSNESNQQLNSSTLNKSSTSFQPPKETSPQPSTSSSCQAASISIQSSTFDQVAFFSPQPSTSSQEESISLQPSTFNQATSFSLQSSTSNQVALTCEDLTPGKILDIVSPIPCVEKTHGIRQRSRQVAEVLNSPENIQNIKNKRQGKKRKQASQVFTSSGNIKSVKQGKSKKSNKEIQATVNKKFKKGKENATKKLKKKRELSSEESESDLEVISLRDSPEIVEWNDDECAGCEENYDDTLSRDDWLQCTICERWSHESCTKYKDMCDRCGDTITN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01302237;
- 90% Identity
- iTF_01302237; iTF_00012878; iTF_00012890; iTF_01302234; iTF_01302235;
- 80% Identity
- -