Rfor022345.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720223.1:14639380-14639838[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7e-11 3.1e-08 34.0 0.0 1 38 14 51 14 56 0.92 2 2 2.5 1e+03 0.4 0.0 15 24 129 137 127 145 0.85
Sequence Information
- Coding Sequence
- ATGCCCCGAACTTACGTAAAAACAAAGATTAAAACCTACACTCCACAAAATTTAGCTGAAGCCatcgaaaaagtaaaaaatggcGAAATGACGCAATATAGTGCAGCGCAACAGTACAATATTCCCATGACGACTCTTTTTGATCACATTAAAGCAAGTGCAGGAAATCTCAGGCCAAATGCAGGTAGACCAACTGCTTTACCTTTAGAAGACGAAAACGAATTAGCCGAAACAATTACAGTCATGGAAAGATGGGGTTTTGGACTTTCAAGACTTGAAATAATGGAGATTGTCGCTGAATATGTGCGGCTGAATGAAATTCCAACGCCATTTAAAAACAATGTCCCAGGTGCAGACTGGTTCATTAATTTTCGGAAACGACATGGATTGTCTATCAAAAAAGCACAGTCTGTAGAATAcgtgagaaaaaaaatgacagatCCTTTCCGTCATtgctaa
- Protein Sequence
- MPRTYVKTKIKTYTPQNLAEAIEKVKNGEMTQYSAAQQYNIPMTTLFDHIKASAGNLRPNAGRPTALPLEDENELAETITVMERWGFGLSRLEIMEIVAEYVRLNEIPTPFKNNVPGADWFINFRKRHGLSIKKAQSVEYVRKKMTDPFRHC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -