Basic Information

Insect: Rhodophaea formosa
Gene Symbol: -
Assembly: GCA_963082605.1
Location: OY720223.1:9862226-9874232[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 7.3e-12 3e-09 37.3 0.0 2 40 16 55 15 59 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	7.3e-12	3e-09	37.3	0.0	2	40	16	55	15	59	0.87

Sequence Information

Coding Sequence: ATGCCGAGACACTACGTTAGAAAAACTACTAGAGCTGCTTACTCTAAAGAAGACTTAAAAACAGCCATTGAAAAAGTTAGGAACAATAAACTGTCCAACTACAAAGCTTCACAAATATATGGAATTCCTAAATCGACACTTAATGACAGAGTCAATAATAAAACAGGTCATATAAGTGAAACCTTGGGACGACCACCAGCAATTCCTCTAGAACTGGAATTAGAGCTCGCATCTCATCTGCGTACTCTGGAAAAATGGGGCTGGGGGTTGTCGCGAGAAGTGCTTGAGATAGTTGgggaatttattaaaaacaataatttgaaaACACCATTCACTGATGGGAAACCTGGGGCTGTTTGGTTCATTTCTTTTAAGAAGCGTCACAATTTATCTATAAAGAAGCCACAACCAGTTGAATATCTGCGCAAAAAAAAGACTGATCCCTTTGTAGTAtatgattatttcaaaaaattggaAGAATTATTAAAAGAGCTGAATCTCGAATTATCGCCAGATAGAATATGGAATCTAGACGAGACATCTATGTGTCTAGATCCTACTAAAACTAAAGTAGTTGGTGCAGTAGGCAAACCATGTACCAGAACTACTGCTGGTACCGCCAAAGAAAACATAACTGTGTTAACTACTGTCAACGCAGCTGGCAAGAAATTGACACCTTTGATCGTTTTTAAAGGAAAGCACGTATATGACGAATGGATgCATTTCAGCGTTGTGGTGACGGATGATCCACCACGGCCCAGGAGGAACCAGTTGCATCGCCGACTCTGCGACCGGTGGACCAAAGCTGGAGGCGCGCCTATACCGAACGGAAACTATTCTCGCTTCACGGCTCTGTTCGACGGAAGCTCGAATGATCCAGAAGTGCAAGAGTCATTCATCGAGTCCTTGGAGGTGTACAAGGAGAGTGGTGATATTTCAGATGAACATGCTGTGCGGTCTGTCTATTGTGCTAGAAGGAGGTGCCTTGGTGAGATGGAGAGGCGCGCACTCAGGGATGACAACCTGGCCCGAGGTATACGTCGCCTTCGCGCGGCCTACGGAACACCGAAGCCCGCGTACAAGCTGTTTCGAGAAATATTCGCCGCAAAGCAGAGAGAGATTGAACGGaTTCCAAACAATGAAGACTCGGACGATTCTAATCATACACTACAACAAAATGATTCTGAACAACTATCGCGACAAGTTCCTAGCCAACAAAGTAGTTCCTCCTCACTGTCCTCTATTAATGTAATGTCAGCACCTGCTGCTGTTAATGAGATTTCtaatgcaaaaagaaaaacatcaaCGATCGCTCGCACTCAAAATGAATTACTAAAGAAGGCCTGTACATACTTATCTCAACCGACGAAAGTATGCAGCCCAGCAGCATTGTTTTGGTCAGAAAAACTTGAAGAATTGGATCGTACACAAAGAATATACGCTGAGAAGGCTATTAatgatattttgtttgaagcACGGTTGGGTAATTTGAATAGATTCTCTGTGAAAATTAATGAATCGCTATCTGCAGATACGGCGCCCTCTGTGCATTCGTCATCACCAGCATATACACCATCGCCTCGCGAAAATAGCTATAACTACAGCTACATGCCATCTCCTTCATCTTCTCTGGAGCAACCACCTGAACATTCTTCATCAACAGCATACACACAATCAGGTTCTGCGTCACAAATAATAATTGCTAATCctgtttcaaacaaaaatattcagccttCTCATCCTCCAAATCAAAACAGCTATAACTTACAAATTATATCACCATCTCATGCCACTTCTCAATTAGTAGGACAAGCAGATCTTCCAAATCAACAGAATAGCTATAGGCCAACATCATCGTTTGCTTCACCAACACCATTAGAAACAGCACATACAAATCCTCCAAACCAACAGGGTAGTTATAGCCTACACATCCCATCACGGTCTCATGCCACTTCTGAATCATTGTCAGAGTATACGGTAGGAACATTGTTTGCTGAATTCAAGCCAAATTtCTTAGGTTTCTACCAGTTGTGCGTGAAGAAAGTGCTCCAGAAGGAACTGATCCAATTAGGCCTAGCTACAAAGGACGAGGATTACGACCACTAG
Protein Sequence: MPRHYVRKTTRAAYSKEDLKTAIEKVRNNKLSNYKASQIYGIPKSTLNDRVNNKTGHISETLGRPPAIPLELELELASHLRTLEKWGWGLSREVLEIVGEFIKNNNLKTPFTDGKPGAVWFISFKKRHNLSIKKPQPVEYLRKKKTDPFVVYDYFKKLEELLKELNLELSPDRIWNLDETSMCLDPTKTKVVGAVGKPCTRTTAGTAKENITVLTTVNAAGKKLTPLIVFKGKHVYDEWMHFSVVVTDDPPRPRRNQLHRRLCDRWTKAGGAPIPNGNYSRFTALFDGSSNDPEVQESFIESLEVYKESGDISDEHAVRSVYCARRRCLGEMERRALRDDNLARGIRRLRAAYGTPKPAYKLFREIFAAKQREIERIPNNEDSDDSNHTLQQNDSEQLSRQVPSQQSSSSSLSSINVMSAPAAVNEISNAKRKTSTIARTQNELLKKACTYLSQPTKVCSPAALFWSEKLEELDRTQRIYAEKAINDILFEARLGNLNRFSVKINESLSADTAPSVHSSSPAYTPSPRENSYNYSYMPSPSSSLEQPPEHSSSTAYTQSGSASQIIIANPVSNKNIQPSHPPNQNSYNLQIISPSHATSQLVGQADLPNQQNSYRPTSSFASPTPLETAHTNPPNQQGSYSLHIPSRSHATSESLSEYTVGTLFAEFKPNFLGFYQLCVKKVLQKELIQLGLATKDEDYDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -