Rfor026780.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720229.1:6613167-6613850[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-11 8.1e-09 35.9 0.0 3 37 17 51 15 57 0.92 2 2 9.1 3.7e+03 -1.4 0.2 14 20 207 213 204 213 0.81
Sequence Information
- Coding Sequence
- aTGTCTCGCAAATACAGTCGAAAGACACTTCGGGCATCATGGTCTGCCGAAGACCTAGAAGAAGCCATgaaaaaagttcaaaataagGAGATGGGTGTTAACGAAGCTTCCAGGACTTTCGACATACCATCACGAACTCTTAGAAGACATCTTTTATCTGGACGTCCTAAAGGACCCCTTGGACGTAACCCCGTTTTTTCTGTTGAGCACGAAAAGAAGTTAGTTgctcatataaaaaaattagaaaaagtcGGATTTGCTCCTGAGAGAAAAGACGTCAAAAAAATGGCATTTCAACTTGCTAAAAAGTTGGGTGTCAAAAATCCGTTTTCAGAAGACACTGAAGCTGCTGGTAATGTGTGGTTTGCAGGATTTATGTCACGGAATCTTGAGTTAAGTCAAAGAAAATCAGAAGGGTTGTCACTAGCTCGGGCATATGGAATGAATAGAGAAGATGTAAAAGAGTTTTTTGATTTACTTGCCAAAATCTACCAAGAACATGATTTTGGCAATCATCCTgaagatatttataatatggatGAGACTGGCATTCAAGTAAATAATAAGCCTGGAAGGGTGATTGCAACAAAGGGAGCTAAAGACTCACTAGCAATGAAAAAGGGGAAAATGTCACAGTCATCGCATGTTGTAACGCTCAGGGCAACTTCCTTCCCCCTGTTCTGA
- Protein Sequence
- MSRKYSRKTLRASWSAEDLEEAMKKVQNKEMGVNEASRTFDIPSRTLRRHLLSGRPKGPLGRNPVFSVEHEKKLVAHIKKLEKVGFAPERKDVKKMAFQLAKKLGVKNPFSEDTEAAGNVWFAGFMSRNLELSQRKSEGLSLARAYGMNREDVKEFFDLLAKIYQEHDFGNHPEDIYNMDETGIQVNNKPGRVIATKGAKDSLAMKKGKMSQSSHVVTLRATSFPLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -