Rfor015401.2
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720216.1:12933016-12934825[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-11 4.4e-09 36.8 0.0 1 41 17 57 17 61 0.90 2 2 4.4 1.8e+03 -0.4 0.0 13 23 138 149 131 150 0.65
Sequence Information
- Coding Sequence
- atGCCGAGAAAATACGTGAGGAAGCACACGGTGGTCCGAGGGCAGTGGACTGAAGAAAACTTAATTCTGGcaattgaaaaagtaaaaaaaggtgaaatatCAAAAAACGAAGCCCAGAGAATTTATGGAATACCAATTCGTACCTTGAGTAGGCGACTCATAACCGGCAATACGATTAAATCTGGATTAGGTCCACAAGCATCACTTGGAACCGAGAACGAAAAACGATTGGCATCTTATATCAAACGTTTAGCTAACGCTGGTTTTGCGCCTGATAGGAATACTATTCGTTCCCTTGCTTATCAGTTTGCAGAGAAACTTGGAATAAAACATAAGTTTTGTAAGGAAAAAGAGAAGGCTGGCCAACATTGGCTGACATCTTTTCTAGAGAGAAACAAAGATATCTCAGTACGTCAAGCAGAAGGTTTATCAGTTGCAAGAGCTCAAGGAATGAACAGAGAAGAAATGGTCACACTTCACACTCCAATTCAATTGATCTGGAAAGCATGGGGTAAAGCTGCAACTGTGGGAAATGCCATATCAGGATTTAAAGCTTGTGGAATATTTCCATTAAATCCCAGTGCGATTCCagatcacttttttgccatatctGATTTAATCGAAGTAGCTCCTGCAACCACTTCCCTTGAAAGTGCTGCTACTGTACACGTAGTTTTATCTCCAGAACAACCTTCAACATCAACACAAACTGCAACTACTAAAGAAACACCAACAAAATTGCTTGAAGAGTCTAATCCGATTCCAAAACTACCTAGTTCGACAGTAAAACGAAAGCAAGTTGCTTGTGTTTTAACTTCCCCGGAGAATGTTTGTAAGAAAACTTCAAATGTGAATTTAGTTAAAGGAGCAGCTAAAAAACGCAAATTAGCTAGTGCACAGTCAAAGTCTTTATCCTCACTCTCAGCATCCACCCCAATCGAAGATGATAATAATGTGTGCACGGAATGTTGGGAAAATTATTATCTAACCAAAAAAAAGGCTGATTGGATTAAATGTTCCTTGTGCCAAAAATGGCTGCATGAATCATGCACAATGTACTCTCCTCATTGTAATAATTGTGGTAGAGAAATAATCCGTAAAAACGCCCAAAAAAGGGAATAA
- Protein Sequence
- MPRKYVRKHTVVRGQWTEENLILAIEKVKKGEISKNEAQRIYGIPIRTLSRRLITGNTIKSGLGPQASLGTENEKRLASYIKRLANAGFAPDRNTIRSLAYQFAEKLGIKHKFCKEKEKAGQHWLTSFLERNKDISVRQAEGLSVARAQGMNREEMVTLHTPIQLIWKAWGKAATVGNAISGFKACGIFPLNPSAIPDHFFAISDLIEVAPATTSLESAATVHVVLSPEQPSTSTQTATTKETPTKLLEESNPIPKLPSSTVKRKQVACVLTSPENVCKKTSNVNLVKGAAKKRKLASAQSKSLSSLSASTPIEDDNNVCTECWENYYLTKKKADWIKCSLCQKWLHESCTMYSPHCNNCGREIIRKNAQKRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01302223;
- 90% Identity
- iTF_01302223;
- 80% Identity
- -