Rfor028597.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720231.1:6102108-6102680[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-14 1e-11 45.2 0.2 1 42 13 54 13 56 0.92 2 2 4.9 2e+03 -0.6 0.0 23 31 99 107 99 107 0.85
Sequence Information
- Coding Sequence
- ATGGAGCCATCGAATAAGAAAAAGCGTGGGGAGTGGACAGAAGCTCAACTAAAAGCAGCCCTCAAAGCTGTAAAACGTAGACAGATGTCACAACGAAAAGCAGCTGCAGAGTTTGGCATACCGAGGCGTACCTTAAGGAACCACATAAAATCTGGATTCACTAAAAAGATAACTGGTCGCACTACGATACTTACTGAATCACAAGAAAAGGATTTATGTAAACGGGTGATTAGACTTGCTCAGGTCGGTTTGCCTTTGACCCCCCAAATTGTGCGTAAGCAAGCCTATGAATTTTGCAAGTCATATAATATTCCCAATTCTTTTAATGATCGTAAAAATATAGCTGGAAAAAAATGGCTTAAAAATTTTATCAGGCGCAATCCAGAAATTTCACTTCGTAGGGCTCAACTACTGAACCTAGCAAGAGCACAGAAACTCAATAAGCATATCGTGCAAGAACATTTTAAGGCTATCAAGACTATTTACGACGACTTGAATATTTCTAGTCATCCGGAACGTGTATATAACATGGATGAAAAGGGCTTAGTTGTAAGAGGACTGTTGAAAAACTGA
- Protein Sequence
- MEPSNKKKRGEWTEAQLKAALKAVKRRQMSQRKAAAEFGIPRRTLRNHIKSGFTKKITGRTTILTESQEKDLCKRVIRLAQVGLPLTPQIVRKQAYEFCKSYNIPNSFNDRKNIAGKKWLKNFIRRNPEISLRRAQLLNLARAQKLNKHIVQEHFKAIKTIYDDLNISSHPERVYNMDEKGLVVRGLLKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -