Rpro017717.1
Basic Information
- Insect
- Rhodnius prolixus
- Gene Symbol
- lola
- Assembly
- None
- Location
- HiC:61265447-61272688[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0072 0.8 10.4 3.7 1 21 15 35 15 36 0.93 2 13 0.022 2.5 8.9 0.8 1 19 44 62 44 63 0.96 3 13 0.00064 0.071 13.8 1.2 1 21 108 128 108 129 0.96 4 13 0.0012 0.13 12.9 1.0 1 21 155 175 155 176 0.95 5 13 0.0064 0.71 10.6 1.8 2 20 185 203 184 205 0.94 6 13 0.0012 0.14 12.8 2.2 1 21 241 261 241 262 0.96 7 13 2.7 3e+02 2.4 1.7 1 13 270 282 270 284 0.81 8 13 0.0002 0.023 15.3 1.6 1 21 298 318 298 319 0.95 9 13 1.1 1.2e+02 3.6 1.3 1 13 327 339 327 341 0.85 10 13 0.0028 0.31 11.7 1.4 1 21 350 370 350 371 0.96 11 13 8.1e-05 0.0091 16.6 2.3 1 20 379 398 379 402 0.96 12 13 1.1 1.2e+02 3.6 1.6 1 21 408 428 408 429 0.87 13 13 1.8e-05 0.002 18.7 1.5 1 23 437 460 437 460 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAACTATTATGTTcgttaatttctcttttttGTCAACATTTCTGTCAGGCATGCCATAGAAATTACAAGAATAAATTCAGTCTAGTACGGCATATCCGATATGAATGTGGCTTATCACCCAAATTTCAATGTCCACATTGTGCGTACAAAGCCAAGAGAAAAGAAACTATGAGAAACCACgttcCCAGAATCGTTTCATGTGCATTACTTGCCGTAGACGCTACCGTCGAAAAGGAGATCTTATGCGCCATCAGAAATATCAATGTGGAAAAGAACCACAGTTTAGTTGCAGTTATTGTCGGTGCCTGCGAAAGATTCAAATGTGATATCTGCCTTAGAGGATACAAATACAAAGAAAGTCTGCTACGGCATAAAAGATATGAATGTGGTAAACAGCCTACAATACCATGTCCCTATTGTCAatataaagcaaaatttaaatGTCCACTACCAATATTCAGTTGTGATGTCTGTGccagaaaatataaatacaaagaaagccTTGTACGCCACAAAAGATATGAGTGCGGTAAAGAACCACAAATACAATGTCCATATTGTACTTACAAGACTAAATTTAAATGTAGTTTAAAATCGCATATTTCAGCCAGCATCAATCAACATCATCATATTAACGAAGTACCTTTCTGTTGCTGCTACAATCTTTCTTCAAGTAGACGGCGTCGGCGTCGTGGTGTAAGCAAACCAAAAAGATACACATGTTCCAGCTGTAACCGCACTTACATGCACAAGATTACTTTGAACCGACATTTGCAATATGAATGTGGAGTAGAGCCTCAGTTTCCATGTCCACATTGCCCCttcaaatctaaatataaaactgatggaCTGCATTGTTTTCGAAGTGTTACCAAACAGAAACTGTACGCTTGCTCCAATTGTAATCGCACTTACATGCACAAGATTACTTTGAACCGTCACATGCAATATGAATGTGGAGTAGAACCTCAGTTCCCATGTCCGCATTGTCCCTTCAAATCTAAACAGAAAACTGAATCTGTCATCATTAACAAACAAGGATTTCAATGTAACAATTGTCTTaagatttataaatacaaacaaagtCTTGTCCTTCATCAAAAGTATGAGTGCGATAAAGAACCACAATTTCAGTGTCCTCATTGTCCGTACCGAGCTAAACGTGCTTCTTCACTtaagaaacatattttttgtaaacattgttttaaaGGACGTTACATATGTATCCGTTGTGGCCGATCTTATGGTAAAAAGTATACCCTGAACTGCCATTTGAGGTATGAATGTGGCATGGAACCACAATTTCCTTGTAAATATTGTCCTTACAAGGCTAAAAGAAGATCTTCGCTTAAAGTTCACCAACTAACTAGGCATCGACAAGAATTGTTCCTCACGAGGAAGACCATTGACACGAACAGATGA
- Protein Sequence
- MEELLCSLISLFCQHFCQACHRNYKNKFSLVRHIRYECGLSPKFQCPHCAYKAKRKETMRNHVPRIVSCALLAVDATVEKEILCAIRNINVEKNHSLVAVIVGACERFKCDICLRGYKYKESLLRHKRYECGKQPTIPCPYCQYKAKFKCPLPIFSCDVCARKYKYKESLVRHKRYECGKEPQIQCPYCTYKTKFKCSLKSHISASINQHHHINEVPFCCCYNLSSSRRRRRRGVSKPKRYTCSSCNRTYMHKITLNRHLQYECGVEPQFPCPHCPFKSKYKTDGLHCFRSVTKQKLYACSNCNRTYMHKITLNRHMQYECGVEPQFPCPHCPFKSKQKTESVIINKQGFQCNNCLKIYKYKQSLVLHQKYECDKEPQFQCPHCPYRAKRASSLKKHIFCKHCFKGRYICIRCGRSYGKKYTLNCHLRYECGMEPQFPCKYCPYKAKRRSSLKVHQLTRHRQELFLTRKTIDTNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -