Rpro010876.1
Basic Information
- Insect
- Rhodnius prolixus
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:10028446-10034169[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.089 10 7.0 0.9 3 23 13 34 12 34 0.96 2 22 5.3 6e+02 1.4 1.6 1 23 44 66 44 66 0.95 3 22 8.7e-05 0.0097 16.5 0.6 2 23 113 135 112 135 0.97 4 22 0.033 3.7 8.4 0.5 2 23 181 204 180 205 0.90 5 22 0.0034 0.38 11.5 0.1 2 23 214 236 214 236 0.95 6 22 0.0011 0.13 13.0 0.1 1 23 242 265 242 265 0.97 7 22 0.00026 0.029 15.0 2.6 1 23 273 295 273 295 0.97 8 22 0.00062 0.069 13.8 0.6 2 23 368 390 367 390 0.95 9 22 0.00017 0.019 15.6 3.5 2 23 397 418 396 419 0.95 10 22 3.6e-05 0.0041 17.7 1.1 1 23 460 483 460 483 0.98 11 22 0.17 20 6.1 0.5 1 23 486 509 486 509 0.95 12 22 0.12 13 6.6 2.6 1 23 546 569 546 569 0.95 13 22 0.33 37 5.2 0.1 2 23 576 598 575 598 0.91 14 22 0.0008 0.089 13.5 1.4 2 23 607 628 607 628 0.97 15 22 0.0055 0.62 10.8 0.1 1 23 633 655 633 655 0.96 16 22 0.014 1.6 9.5 1.8 1 23 716 739 716 739 0.89 17 22 0.06 6.7 7.5 0.5 2 23 827 849 826 849 0.95 18 22 1.1 1.2e+02 3.6 0.8 2 23 856 878 855 878 0.93 19 22 1.2 1.3e+02 3.5 1.1 2 23 890 911 889 911 0.90 20 22 1.1 1.2e+02 3.6 3.6 1 23 923 946 922 946 0.90 21 22 0.0022 0.25 12.1 0.0 1 23 971 993 971 993 0.98 22 22 0.00055 0.062 13.9 0.7 1 23 999 1022 999 1022 0.94
Sequence Information
- Coding Sequence
- ATGCTTTATTCTCACAGAGAGGAGGCTTCCAAGGCTTGTGgcatatgtttaaaaatatgtgacgatacagaaaatttggcACAACATGTTGAAACATGTCATCCGAGAAACAAGACCGATCAACGAAGGTATAGCTGTCAAGTTTGCGCCAGGCAGCATGATTCTAGGAAAAAACTGGTAACTCATGCTAAAATCCATAAGTTAACTGACAATCATGGCAATTTAGTTGATCCAGAATCAGTGGTGGTGCTCAATAGTGACTACTATCCACATGACATGGTTGTTAGCCAATCGGGGATGCCTCCAATGCAAACAGATGATAACAACTTCCTATCCAGTTGCGAAATATGTTTTAAAGTGTTTGAAAATGAAGCGAAGTTAAGTAAACATAAGCGTACGGCTCATAAAGATCTTAATTCATCAAATAATGCCAGTCCatatcatttctttttcgctTGTGAATTATGTGGATTATCACATCTATCTCGTTCGGAACGGTGGCGCCATATGGTGCTGTTACATTCTGGAGATCCAGCGGTAACATGTCAACAACAAGAATGTGGGAAAGTATTTCCAACATCTGCTGTGAAACGTGAACATGAAGAAACACATCATGCTACTCAGGGCCAGTATCCAAATACTTGCGAAGTTTGCGGAAAGATGTGGAAAACAAGAGTAGAATATTGGAAGCATATGATGGGCGTCCATCCAGATTATTTACCTTTTGTTTGTGGAGTTTGTTTAAAGgtgTTTACTGAATTGTCTCCACTTGTCAACCATGTAAGAAGTACACATTGGCCCTTATTGGGAGGCGATTTTTGTTGTGACATCTGCGGCCGTCCATATTCTAAAGTCTCGAAGATGACTCGCCATCGAAAGGTTCATTATGTGCCAACGAACTGTCCAGAGATGAGGGCTATCTTAGATAATCCCAAGATTGAAGGAGTTGCTGGATCAATTAAAGTGGGCAACGAtaggcactttttacaaaatgatttttcaGCACTTTGTTGTGATCTTTGTCAAAACGTTGAAGAACGTGTAGAATTTGCTAATCTAGAAGAATTAGGCAAACATAGATTTGAAAAGCATAATGTTATGCCTTGTGATCTTTGTCCGAAATATTATGgtCGAACATCTCATCTTTGGAAACacgtaaataaaattcataaggGTCATCCAGATGTAACGTGCCCTGTTTGTCATCGTACTTCAGCGTCTAAATCTCATCTTGCTACTCATATTGCTAAACATCACAAATCTTCTGCAGACTCTGATTGCTACGAGAGAGGAGAAAACGGTGTAACAAAGTGTAGCAaatgtaaaaaaGTCCACGCCCTGAACCAATGGCCTTACCACCCACCGGTTGATGGAATGTATACTTGCGAAAGgtGCAACAAAACTTTCGCCGCAGagaatttactttataaacacATGCGAAGTTCTCATATAATGTATAAATGTGAATTATGCCAAGCTAAGAAAAGCTCTAAAGCAGATCTGTACAATCATGTTAAAGAAGAGCACGGCGATCATCCAAATGTTAGATGTGCAATTAGAGATTGTACACAGATTTTGAGATGTAAAGCTGATCTTGATCGACATGTAAGAGATCATAGACAAAATTCCCAGCTACATATTTGCAAATTCTGTGCAGAGTTGGTTActagcaaatttaaattaaaacgcCATCTTAAATCCATTCACGCCCAGGAATCGAAGTTCTTATGTTTCCTTTGTCTAAAACCACTTGCTAGTTTCGAGGATTTGAGggCACATATAGTAAGTGCGCACGCAGTAGCTCTAGAGAGGCCCAATACCTGCCCGATATGTGCAAAACCTTGTTCCAATAAATCAAAAATGATGGAGCATATAAAGTATCACGGTCCAACGTTCCATCCATGTCGTATCTGTTTGAAAATTTTGCCATCAAAAGCTGATCTGGAAGCACATTTGAATAATCATCCAACCGATTCTGCGGATGAAGATGACCTCCAGATTGATGAAGCTGCCCTAGATCCAGATAGTATAATGGACATAATTGGAGCTCCAactgaCGTTAAAGTAAAACGAAACATTGAagatgaagatgaagaagagaaaaaaagtgaaaacgaACCtccaattaaaaagattaaagttGAATATTCTTGTGACAAATGTGAAGCTTCGTTTACAACTGATACAGAATTGAGAGAACATTGTCAATCTGAGCACAAAGATGatacaaataaaacaagtattcTAGAATCTGTTTTATCGGAAGGCAAACGTGTAAAATCAGAAGATGAGGAAATTACGGAAAATCGAAAAGAAAACGGGGTATCCAGTAGTAATATAAAGACTGAATCAGATAGGAATTTCATGCATCAGCTGGGACTGATGCCTGACACCACTGATAAATCATCATTAACGCCATCATCGATttcgaaattaaaaattgtaagaaaagtGTATATAAATGATGATACACCTAGTAAATGTGAAATGTGCGGTAAAGAATGGCCTGCAAAGAGACATCTTTGGCAACATCTCATTAGgTACCATCGTAAAGAAGCTAGTACAACTTGTGGAGTTTGCTTAAGATATTGTTCTACTTTTGCAAAATTAAGTGTTCATTTAGTAATGGAACATCCAGATATATTCGAAGGTGATGGTACTAATTTGTCTTGCAAAGTTTGCGGAAAATACCATAACGCTAGGTCCAAACTGTTGAACCATGCGACGGTGCACGATTCAGATGAAGAAAGAGCTCAGTCGTCGTATCATTGCTGTCTAATTTGTGAATCAACATTCCATACTTTCCCACAACTGGGGAGTCACATGGAAGTAGAACATAAGAAGgagatggTTCAAGAAAAGATACGGAAACCACCTCTACCACCCAAAGGAACAGAAAAATTGCCTTTCTTTTCTTGTGAAATATGTTCACTGGTGTTCGCTTCTGGAATAGGACTGGCCAACCATAGACGTATACATGAACATTCTGATCGATTCAAGTGCGGCCAATGTGGTGAAGTGTGTTCTTCAGCTGATGCTCTCTCTTCGCATAAATTGCAACGTCATCAAGGCGCTGAATTTaagaagaagacggtGAAAatgatgatgaagaagaagtTGATGAGGACGAGGAAGAAGTAG
- Protein Sequence
- MLYSHREEASKACGICLKICDDTENLAQHVETCHPRNKTDQRRYSCQVCARQHDSRKKLVTHAKIHKLTDNHGNLVDPESVVVLNSDYYPHDMVVSQSGMPPMQTDDNNFLSSCEICFKVFENEAKLSKHKRTAHKDLNSSNNASPYHFFFACELCGLSHLSRSERWRHMVLLHSGDPAVTCQQQECGKVFPTSAVKREHEETHHATQGQYPNTCEVCGKMWKTRVEYWKHMMGVHPDYLPFVCGVCLKVFTELSPLVNHVRSTHWPLLGGDFCCDICGRPYSKVSKMTRHRKVHYVPTNCPEMRAILDNPKIEGVAGSIKVGNDRHFLQNDFSALCCDLCQNVEERVEFANLEELGKHRFEKHNVMPCDLCPKYYGRTSHLWKHVNKIHKGHPDVTCPVCHRTSASKSHLATHIAKHHKSSADSDCYERGENGVTKCSKCKKVHALNQWPYHPPVDGMYTCERCNKTFAAENLLYKHMRSSHIMYKCELCQAKKSSKADLYNHVKEEHGDHPNVRCAIRDCTQILRCKADLDRHVRDHRQNSQLHICKFCAELVTSKFKLKRHLKSIHAQESKFLCFLCLKPLASFEDLRAHIVSAHAVALERPNTCPICAKPCSNKSKMMEHIKYHGPTFHPCRICLKILPSKADLEAHLNNHPTDSADEDDLQIDEAALDPDSIMDIIGAPTDVKVKRNIEDEDEEEKKSENEPPIKKIKVEYSCDKCEASFTTDTELREHCQSEHKDDTNKTSILESVLSEGKRVKSEDEEITENRKENGVSSSNIKTESDRNFMHQLGLMPDTTDKSSLTPSSISKLKIVRKVYINDDTPSKCEMCGKEWPAKRHLWQHLIRYHRKEASTTCGVCLRYCSTFAKLSVHLVMEHPDIFEGDGTNLSCKVCGKYHNARSKLLNHATVHDSDEERAQSSYHCCLICESTFHTFPQLGSHMEVEHKKEMVQEKIRKPPLPPKGTEKLPFFSCEICSLVFASGIGLANHRRIHEHSDRFKCGQCGEVCSSADALSSHKLQRHQGAEFKKKTVKMMMKKKLMRTRKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -