Basic Information

Insect: Rhodnius prolixus
Gene Symbol: -
Assembly: None
Location: HiC:6882126-6894908[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00031 0.034 14.8 4.1 1 23 217 239 217 239 0.97

2 11 9.4e-06 0.0011 19.5 1.5 1 23 245 267 245 267 0.98

3 11 0.0001 0.011 16.3 2.6 1 23 273 296 273 296 0.96

4 11 0.13 14 6.5 3.4 1 21 302 322 302 324 0.95

5 11 9.5e-05 0.011 16.4 1.9 1 23 330 352 330 352 0.99

6 11 0.00019 0.021 15.4 0.6 1 23 358 380 358 380 0.98

7 11 0.00035 0.039 14.6 0.8 1 23 388 411 388 411 0.97

8 11 0.0002 0.022 15.3 2.3 2 23 418 439 417 439 0.96

9 11 0.00022 0.025 15.2 0.3 2 23 446 467 445 467 0.97

10 11 2e-06 0.00023 21.6 1.9 1 23 473 496 473 496 0.96

11 11 3.1e-07 3.4e-05 24.2 1.8 1 23 510 532 510 532 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00031	0.034	14.8	4.1	1	23	217	239	217	239	0.97
2	11	9.4e-06	0.0011	19.5	1.5	1	23	245	267	245	267	0.98
3	11	0.0001	0.011	16.3	2.6	1	23	273	296	273	296	0.96
4	11	0.13	14	6.5	3.4	1	21	302	322	302	324	0.95
5	11	9.5e-05	0.011	16.4	1.9	1	23	330	352	330	352	0.99
6	11	0.00019	0.021	15.4	0.6	1	23	358	380	358	380	0.98
7	11	0.00035	0.039	14.6	0.8	1	23	388	411	388	411	0.97
8	11	0.0002	0.022	15.3	2.3	2	23	418	439	417	439	0.96
9	11	0.00022	0.025	15.2	0.3	2	23	446	467	445	467	0.97
10	11	2e-06	0.00023	21.6	1.9	1	23	473	496	473	496	0.96
11	11	3.1e-07	3.4e-05	24.2	1.8	1	23	510	532	510	532	0.96

Sequence Information

Coding Sequence: ATGGAGGATCAAACTCCAGGGCAATCCTCGTCAGGGGAAACTATCACTGACATTCAAAACTATCTGGAAACattcaataaagaaatagaaggcGGAGACAACAATGTTACACAAGTTAAATTTGAAACAggCACTGAGCAAAACAATGAAGAGGCTAATTCTACGGAAAATGGTGAAAGTGGAGCTTATTATCTAGATCAGTCTACAGGCCAGTATTATTATGAGACTAGAGGTGAAGATGGGCGAAGGGTTATGACTGTTGTACAAGGTATTCCTGAATCTCCACCGACTGAAGAGCATTACGTTTCTATCACCGAAAATAATATAGAAGAAAATGAACAACAAAGTGAAGATGTACAAGTAGTTGATGAAAATGTCCAAATGGTGGTTGGAGCTGGTGATTCATTTCAAACGGTTACAATTGTGCCATCGGAGACGAGTAGCGGGGAATTAAGTTATGTTCTTATTGTACAACAGCCTGGCGAGGATGATGAcaaggaaaaagaagaagatcaaGATTTAACAGTTTATGATTTTGATGACCAAGAGGAGCCAAATCCAATCAGCGGCGCGGAATCTGCTGATGAAGAAGACAAAAGCAAAGTGATAAAAGTAATGCCCAAGAAATCGCAGACTGTTACACAGGCCCACATGTGCAATTATTGCAATTACACAAGTCCGAAGAGgtatttACTATCACGTCATATGAAATCACATTCAGAAGAAAGGCCACACAAATGTAGTGTGTGCGAAAGAGGTTTTAAAACTCTGGCATCATTACAAAATCACGTCAATACCCATACTGGCACAAAACCTCATCGTTGTAAATATTGCTCAAGTGCTTTTACTACCTCagGGGAACTTGTACGTCATGTCAGATATAAACATACACATGAAAAACCACATAAATGTACCATTTGTGAATATGCCAGCGTAGAGCTTAGTAAGATGCGAAACCATATGAGATGCCATACAGGAGAAAGGCCTTATCAGtgTCCACATTGTACGTACGCCAGTCCAGATACGTTCAAGCTTAAACGACATCTTAGAATACATACGGGTGAAAAGCCATACGAATGTGATATCTGCATGACGAGGTTTACCCAGTCAAACAGTCTTAAGGCTCACAAACTAATACACAGTGTAGGTGAAAAGCCTGTGTATCAATGTGAACTATGTCCCGCTACTTGCGGCCGAAAAACTGATCTCAGGATTCATGTACAAAAACTTCACACCTCAGATAAACCATTGAAATGTAAACGATGTGGTAAACAGTTTCCAGATAGGTATACTTACAAgGTACATAATAAATCTCACGAAGGTGAAAAGTGTTGGAAATGTGATCTATGCCCTTATGCGTCCGTTTCACAACGTCATTTAGAGTCGCATATGTTAATACATACCGATGAAAAACCATTCCAATGTGATCAGTGTGATcaggctTTCAGGCAAAAACAGTTACTGAAACGACACCAAAACCTTTACCACAATCCTAATTATGTTCCTCCAGCTCCACGAGAAAAAACACACGAATGTCCAGAATGTCAACGTGCGTTCAGGCATAAAGGGAATTTAATTCGTCATATGTCAGCCCATGATCCACTGTCAACAGctcacgaaaaagcgttagcATTAAAATTGGGTAGACAGAAGAAGATACAGATCATAGATGGTCAACAGGTTGAAGTGATGCCTGGCGAAGAAGAGGATGAAGATGAAGCTGATGAAACGGACGCCACTGGTGAAGACAATGGTCTGGAAGGATCTGTAATGGCTGTGGAAGGCTGTGATGGACAGCAGTATGTTGTTCTAGAAGTTATACAACTACAGGATGGCGAAGGTGAAGAGCAACAAGTGGCTGTGGTAGCTGGTGACCAAACTATTGAACAGGCCGTTGCAGCGTTAAATTCATCGTCTCAGAATTCTGGAACTAGTGAAACGATTATTCCTGACCCACTGGCTACTACAGATATAAgattAGAAGATGGTACACAGATTAAATGCGAAACTGAAAAACGTAATTCACTTCAAGATGATATGCAAAATTGTTTCGGCTTTGATGAAGACGAAGACGATAAAGAAGAAATGGAgcagtaa
Protein Sequence: MEDQTPGQSSSGETITDIQNYLETFNKEIEGGDNNVTQVKFETGTEQNNEEANSTENGESGAYYLDQSTGQYYYETRGEDGRRVMTVVQGIPESPPTEEHYVSITENNIEENEQQSEDVQVVDENVQMVVGAGDSFQTVTIVPSETSSGELSYVLIVQQPGEDDDKEKEEDQDLTVYDFDDQEEPNPISGAESADEEDKSKVIKVMPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKYCSSAFTTSGELVRHVRYKHTHEKPHKCTICEYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICMTRFTQSNSLKAHKLIHSVGEKPVYQCELCPATCGRKTDLRIHVQKLHTSDKPLKCKRCGKQFPDRYTYKVHNKSHEGEKCWKCDLCPYASVSQRHLESHMLIHTDEKPFQCDQCDQAFRQKQLLKRHQNLYHNPNYVPPAPREKTHECPECQRAFRHKGNLIRHMSAHDPLSTAHEKALALKLGRQKKIQIIDGQQVEVMPGEEEDEDEADETDATGEDNGLEGSVMAVEGCDGQQYVVLEVIQLQDGEGEEQQVAVVAGDQTIEQAVAALNSSSQNSGTSETIIPDPLATTDIRLEDGTQIKCETEKRNSLQDDMQNCFGFDEDEDDKEEMEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01479626;
90% Identity: iTF_01479626;
80% Identity: -