Rpro004558.1
Basic Information
- Insect
- Rhodnius prolixus
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:15470565-15473677[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00038 0.043 14.4 2.6 1 23 96 118 96 118 0.97 2 12 0.62 70 4.3 0.9 2 12 139 149 139 151 0.90 3 12 4.9e-05 0.0055 17.3 0.5 1 23 161 183 161 183 0.98 4 12 4.6e-08 5.2e-06 26.8 2.1 1 23 189 211 189 211 0.98 5 12 9.8e-07 0.00011 22.6 0.1 1 23 225 247 225 247 0.98 6 12 1.9e-07 2.1e-05 24.8 0.3 1 23 253 275 253 275 0.97 7 12 7.5e-06 0.00084 19.8 4.9 1 23 288 310 288 310 0.97 8 12 2.9e-06 0.00033 21.1 0.3 1 23 316 338 316 338 0.96 9 12 0.022 2.5 8.9 0.1 3 23 346 366 345 366 0.96 10 12 0.0011 0.12 13.0 0.1 2 23 379 400 378 400 0.92 11 12 9e-06 0.001 19.6 9.1 1 23 406 428 406 428 0.98 12 12 8e-05 0.0089 16.6 0.4 2 23 435 456 434 456 0.93
Sequence Information
- Coding Sequence
- ATGAATTTAGAGGAAATGTTAGGAGGTCCTGCACGTTTGCTGCAGATGGAAGATTATATGAAGCCTATGTTTGGCCAGGATACAGATATTGATGTAAAACAAGAATTAGCTGTAGAGTGTTCAATCAAGCCAGTTGGACTGTGTGCGCCCTGTCAGAGTTATTACGACCAAAACGGATTTCTTTCTCCACACGAGGCTTGTCCAGGTTGTTTAAAAAGAGTGGAATCATTGGACCGTAGACCTCCTTGTAATACCTGTTCAATGGAGGCATGTGTTTGTCCAGGATTTCAGTGTGCTTATTGTAATCAATCATTTCAGactacatttttattgcaaaagcATACATTTGTCCACTGCACTGATACAACTATGTCTAGCAGTACTTGTACAACTAATGAGAATAACAAAGATCCACAATGTCCCAGGTGtcaaaaaacttataaacaaTTCGAACCATCGCGCCATAATTGCTCTTCACGTTTCATTTGCCATATTTGTGGAAGTGGTCTGAGTTCTGCTTACAACTTAAGGATTCATCTAATGAAGCATTCAGGAGAATTGCCACACAAATGTGAAACATGTGGTAAGTCATTTAGTAAGCCAAGCGAACTATTACGACATACTAGAGTACATACAGGCATAAAAGCGGCTAGTAGGCctggtttaaaaatatatccatGCGAAGTATGTTCTAAATCGTTTGGAAGGCCAGCCGATCTTCGTAGACATGCATTAACACATAGTGGTTCAAGACCATTTGCATGTACCGTTTGTGGTTTAGCATTTAGTGatacatcaaatttaaaaaagcatatCACAACTCATTTAAAAGGTGGTGCTGCAGAATTACAAGCTAAAACTTATCATTGTTCATATTGTAATAAACTGTTTTCCCGGCCTTCTGAATTAAAAAGACATTTTACTACACATACTAAAAACCGTCCATTTTCATGTGATTTTTGTGGTCTTGCTTTCAGTGACACATCAAATCTAAGGAAACACGTATTAGGACATGCAAGATTAGGATTGAGAAATTGTGTTATGTGTTCAGCATCTTTTGAATCATTTGAGGAATTGGAATCGCATGTGGTTACACATAGAAAAGCCACTGAAGATCGGATAATGGACTGCGTACGTTGTGACATTTgtggtaaaatattttcttctgaaTTATATTTATCTGGCCATAGAGCGGGCCACACTGAATCAAGGCCATATTCCTGTTCTGAATGCCATAAAACTTTCAAATCTTTGTCGCATTTGAAGAACCACCATCTTACACATACTGGAGCCAGGGGACAAGTATGCAATACCTGTGGTAAAGCTTTTCTTACTAAATCTAGCCTTAGACGACATGAAGGAATACATACTAGACAAAATCCTAATAATGTTCAACAGCAACAACAGCATCATCAACCACATCAACCGCAGCAACAACAACATCAACCACAGCAGCACCAACAACATCAACACCAGCAGCAACAACAACCACCACAACCTCAACAACCCCCACAGCAGCCATCACCAGTAGTTTTAGGCCTTGCAATGTGCCATGACGCGAATGCTGGTCCTCATCGATCTACACCTATTGATCATCGAACGCCTCTTAGCCACCGACCAACAATTGAACCTCCACAACCAACTCCTCCCCCGCAACAAATAGATCATAGAACGGTTGACCATAGAGCATCAATAGAACATCGGACAATGGACCTTAGATCGCCAATAGAACATCGAGGGGATATTACTTCatgctaa
- Protein Sequence
- MNLEEMLGGPARLLQMEDYMKPMFGQDTDIDVKQELAVECSIKPVGLCAPCQSYYDQNGFLSPHEACPGCLKRVESLDRRPPCNTCSMEACVCPGFQCAYCNQSFQTTFLLQKHTFVHCTDTTMSSSTCTTNENNKDPQCPRCQKTYKQFEPSRHNCSSRFICHICGSGLSSAYNLRIHLMKHSGELPHKCETCGKSFSKPSELLRHTRVHTGIKAASRPGLKIYPCEVCSKSFGRPADLRRHALTHSGSRPFACTVCGLAFSDTSNLKKHITTHLKGGAAELQAKTYHCSYCNKLFSRPSELKRHFTTHTKNRPFSCDFCGLAFSDTSNLRKHVLGHARLGLRNCVMCSASFESFEELESHVVTHRKATEDRIMDCVRCDICGKIFSSELYLSGHRAGHTESRPYSCSECHKTFKSLSHLKNHHLTHTGARGQVCNTCGKAFLTKSSLRRHEGIHTRQNPNNVQQQQQHHQPHQPQQQQHQPQQHQQHQHQQQQQPPQPQQPPQQPSPVVLGLAMCHDANAGPHRSTPIDHRTPLSHRPTIEPPQPTPPPQQIDHRTVDHRASIEHRTMDLRSPIEHRGDITSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01478947;
- 90% Identity
- iTF_01478947;
- 80% Identity
- -