Basic Information

Insect: Rhodnius prolixus
Gene Symbol: -
Assembly: None
Location: HiC:62794143-62798034[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.037 4.2 8.2 1.7 1 23 350 372 350 372 0.90

2 18 0.00012 0.013 16.1 1.0 1 23 378 400 378 400 0.97

3 18 0.0048 0.54 11.0 1.9 2 19 411 428 410 431 0.92

4 18 0.002 0.22 12.2 5.1 2 23 439 460 438 460 0.96

5 18 0.0027 0.3 11.8 0.3 2 23 467 489 467 489 0.92

6 18 1.2e-07 1.4e-05 25.5 3.9 1 23 495 517 495 517 0.98

7 18 3.3e-06 0.00037 20.9 1.7 1 23 526 549 526 549 0.96

8 18 0.0067 0.75 10.5 0.0 1 23 559 582 559 582 0.91

9 18 0.0016 0.18 12.5 0.4 1 23 603 625 603 625 0.98

10 18 2.2e-05 0.0024 18.4 3.0 1 23 631 653 631 653 0.99

11 18 0.045 5 8.0 3.7 1 23 672 694 672 694 0.96

12 18 0.053 6 7.7 1.2 1 23 700 722 700 722 0.98

13 18 2.4e-06 0.00026 21.4 0.7 1 23 738 760 738 760 0.99

14 18 8.5e-07 9.5e-05 22.8 0.5 1 23 766 788 766 788 0.98

15 18 0.00055 0.062 13.9 0.2 1 23 794 816 794 816 0.97

16 18 0.00049 0.055 14.1 3.4 1 23 822 844 822 844 0.98

17 18 5.1e-06 0.00057 20.3 0.9 1 23 850 872 850 872 0.99

18 18 5e-06 0.00056 20.4 0.6 2 23 879 901 879 901 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.037	4.2	8.2	1.7	1	23	350	372	350	372	0.90
2	18	0.00012	0.013	16.1	1.0	1	23	378	400	378	400	0.97
3	18	0.0048	0.54	11.0	1.9	2	19	411	428	410	431	0.92
4	18	0.002	0.22	12.2	5.1	2	23	439	460	438	460	0.96
5	18	0.0027	0.3	11.8	0.3	2	23	467	489	467	489	0.92
6	18	1.2e-07	1.4e-05	25.5	3.9	1	23	495	517	495	517	0.98
7	18	3.3e-06	0.00037	20.9	1.7	1	23	526	549	526	549	0.96
8	18	0.0067	0.75	10.5	0.0	1	23	559	582	559	582	0.91
9	18	0.0016	0.18	12.5	0.4	1	23	603	625	603	625	0.98
10	18	2.2e-05	0.0024	18.4	3.0	1	23	631	653	631	653	0.99
11	18	0.045	5	8.0	3.7	1	23	672	694	672	694	0.96
12	18	0.053	6	7.7	1.2	1	23	700	722	700	722	0.98
13	18	2.4e-06	0.00026	21.4	0.7	1	23	738	760	738	760	0.99
14	18	8.5e-07	9.5e-05	22.8	0.5	1	23	766	788	766	788	0.98
15	18	0.00055	0.062	13.9	0.2	1	23	794	816	794	816	0.97
16	18	0.00049	0.055	14.1	3.4	1	23	822	844	822	844	0.98
17	18	5.1e-06	0.00057	20.3	0.9	1	23	850	872	850	872	0.99
18	18	5e-06	0.00056	20.4	0.6	2	23	879	901	879	901	0.96

Sequence Information

Coding Sequence: ATGAGACTTGTTGTGAAAAATAGTTTGGGACAAGTAGTGTCGTTGCAAATAAAGCCTGACGAAACTTTTGTGGATTTAAAAGAGAGAGTTGAAGAAGAAGCTGgcatttcttttgatttaagaGACATTGCGAGTCGGGGAAAAGCTATTATTGACACACAAAAAGTTgtggattattttttaaatcagaatGAACCAGCTCAACAAAATGTCGTTTGTTCCGTACCAAATTGTTCAAATTCAAAAGCGAAAAATCcagataaggttttttttaattttccacaagAAGAAATCCGGTGTCACCAATGGGTTTTATATTGCCAAAGGCTGAGTATGCTATCTGGAAAACATAGGCTTAATCTAACAAGTGAATCAGCAATTTGTAGCGATCATTTTCGTGAAGATCATTTTGTCAAAAATACAACAACGATCTTAAAACGTACAGCTGTACCTTGTATTAATCCTGAATTACCAGTTGTCGAAGCACCACCTTCTTATAACAAACGCCACAGGACTATAGTGAAAAAAGAACCTAGTAGGGATGTGACCGTGCCAATGGTGTGCCGATTGTGTGCACAATATTGTACTgactgtatatttatttttgatgaaattggtAAACAGTTGAGgctttcaaataaaatcaattcttgCCTACCCATAAAAGTGACTATGACAGATCATCTTCCCAAACAAGTTTGTCGTGAGTGTATTCGCCAGTTAAATAAGATTTACCTATTAGCGGAAACGTGTAGTAATGCAGATACCAAgcttaaaaaaatggtaaaagagGATATGTTATCTTCTAGAAACGTTGAAGCAGTTAATGAAGAGCCTGAAAGTGTTGAACAGATTTATTGTCAGAATTGCCCCCTTTGTTTTGAAGGAAAAATGTGTGAACCTGATGTCCAATTAGAAGAGAAACAAGAAGAACAGGCTAATGAAGTTGACCAGTCTAGTCCATCGCATCaccaaataaatttgaaatttgatttagAAGCTATTGGTTGTGAAGACTCAGATGTGGAATCAGATGAAGAAACATTTTATAAGTGCAAAATTTGTTCACAAATATTTACcagtttttctattcttttgacACATTCCTTTTCACACagagaaagtgatttttataaatgtagTATCTGTACAAATGATTTTGTGTCTCCAAATCACTTGAAAGAACATATGGATGAGCACAAAGCTGCCAAAGTAGAAGAGGGTGAATGTAGTTGTGATATTTgtgaaaaaacttttaaatcagCCATAGCTTTTAGAGCTCATTCTTGTGAAAAAAACTCGATATTGACAAGTAAATGTAAGATCTGCCATAAGTCTTTTAGGACAGAAAGCAGGTTGgaatttcacatgaaatttCATTCTGGTGCGACTCCTGGATATTGTGATATATGCCGCAAGTCATTTCCAGATGAAATAAAGTTATATAAGCACACAGCATACTTACACGCCGCCGATAAAAGCTATTGTTGTGATGAATGTGGTAAAGTGTTCAAGTCTCAGAGTTCATTGAAGTATCACCAGAGATCGCACCAAGGTGAGAGCGTAATGCAGCCCTACTCTTGTGAATGGTGTAGAAAATGTTTTATCCGTAAAAGTATGCTCCGCAACCACATAGCTTCGGCTCATCAGCACATGGCTCAGGAAGCCTCCTGCTTTACTTGTAAAATATGCAATGAAGCTTTTCCTTCAACTAATTTAGCTGTTGCTCATATGGATGCACAGCATAGAGAAGAATGTATGGAATTACCTAGCTACAGTTTCGAAATGCATACTATTACAAGGTTGTACACTTGTGAATACTGTGAGAGATATTTTGCTGAAGGGAATGCATTAAATAAGCACCGTGAAATGCATCCTCAAGATTCGCCTTATcagtgtaaaatttgtggaaaatgtttttcatcATTCGGAGAACAAAATGATCACAGATTAACACATACCGATCAAGAATTGCCTGCTGAATATGTTGGTGAATTTCCGATTCCTGCTGCGTATTTTTGTGAATATTGTGAACGATGTTTCatgaattatataaaattctcAGAACATTTAACTATCCATTATGGTATAGAACCGTATCATTGCAGATTTTGTGAACTTAGATTTGCTACTCTTGCTGAAGCTACTGAACATAGACTAACCCATGTGGAATCTCTCGAGCCTGCTGATGATTTTAACTTATTCAAGCCGTACGAATGCCATTACTGTAGTAAATCATTTGCTATTGAAGATGCCTTAGTCAAACATATTCGTATGCACACTGgagaaaaaccttttatttgtGATCAGTGTGGTAAAGGTTTTTCACAAAGTTCCGGCCTTTATACTCACCAAAAAGTACATTCAAATGAACGACCCTACAATTGCCCAATTTGTCCTAGGACTTTTAAAATCAAAGGAGACCGTGATGTACATGTTCGTAAACATTCTGGAGATCGCCCTTACAAATGTGAATTCTGTGGAAAAGCTTTTATGACTCAGCATGTTTATTCTCAGCATCGTAAAATACATACTGGCGAAAGGCCTTACAAATGTGATGTTTGTGGAATTGCGTTTCGTCGATCACATGTGCTCACCGTTCATAAACGCATACACACTGGTGAAAAACCAAATGTGTGCGATATTTGTGGAAAGAGTTACCGGCAGAAAGGAGACATGCTTAAGCATAGACGAATTAAACATGGTTTTGGGTCAGCTATGAATTCAACTACTCGGCAGATGACTAATGCAGAAGTTAGCGAAGAATTGTTGTTAGTGCGTGGATACATTTAG
Protein Sequence: MRLVVKNSLGQVVSLQIKPDETFVDLKERVEEEAGISFDLRDIASRGKAIIDTQKVVDYFLNQNEPAQQNVVCSVPNCSNSKAKNPDKVFFNFPQEEIRCHQWVLYCQRLSMLSGKHRLNLTSESAICSDHFREDHFVKNTTTILKRTAVPCINPELPVVEAPPSYNKRHRTIVKKEPSRDVTVPMVCRLCAQYCTDCIFIFDEIGKQLRLSNKINSCLPIKVTMTDHLPKQVCRECIRQLNKIYLLAETCSNADTKLKKMVKEDMLSSRNVEAVNEEPESVEQIYCQNCPLCFEGKMCEPDVQLEEKQEEQANEVDQSSPSHHQINLKFDLEAIGCEDSDVESDEETFYKCKICSQIFTSFSILLTHSFSHRESDFYKCSICTNDFVSPNHLKEHMDEHKAAKVEEGECSCDICEKTFKSAIAFRAHSCEKNSILTSKCKICHKSFRTESRLEFHMKFHSGATPGYCDICRKSFPDEIKLYKHTAYLHAADKSYCCDECGKVFKSQSSLKYHQRSHQGESVMQPYSCEWCRKCFIRKSMLRNHIASAHQHMAQEASCFTCKICNEAFPSTNLAVAHMDAQHREECMELPSYSFEMHTITRLYTCEYCERYFAEGNALNKHREMHPQDSPYQCKICGKCFSSFGEQNDHRLTHTDQELPAEYVGEFPIPAAYFCEYCERCFMNYIKFSEHLTIHYGIEPYHCRFCELRFATLAEATEHRLTHVESLEPADDFNLFKPYECHYCSKSFAIEDALVKHIRMHTGEKPFICDQCGKGFSQSSGLYTHQKVHSNERPYNCPICPRTFKIKGDRDVHVRKHSGDRPYKCEFCGKAFMTQHVYSQHRKIHTGERPYKCDVCGIAFRRSHVLTVHKRIHTGEKPNVCDICGKSYRQKGDMLKHRRIKHGFGSAMNSTTRQMTNAEVSEELLLVRGYI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01478860;
90% Identity: iTF_01479474;
80% Identity: iTF_01301670;